Strain Fitness in Escherichia coli ECOR38 around HEPCGN_25675

Experiment: Bas19

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas19
3,867,811	+	yciT	HEPCGN_25665	0.27	+0.6
3,867,812	-	yciT	HEPCGN_25665	0.27	+1.0
3,867,820	+	yciT	HEPCGN_25665	0.28	+0.6
3,867,863	-	yciT	HEPCGN_25665	0.34	+1.3
3,867,863	-	yciT	HEPCGN_25665	0.34	+0.5
3,867,863	-	yciT	HEPCGN_25665	0.34	+1.6
3,867,868	+	yciT	HEPCGN_25665	0.34	+0.2
3,867,925	+	yciT	HEPCGN_25665	0.42	+1.0
3,867,926	-	yciT	HEPCGN_25665	0.42	-0.7
3,868,003	-	yciT	HEPCGN_25665	0.52	+0.6
3,868,153	-	yciT	HEPCGN_25665	0.72	+0.2
3,868,187	-	yciT	HEPCGN_25665	0.77	+1.3
3,868,335	-				-1.1
3,868,335	-				+0.9
3,868,335	-				-1.5
3,868,387	-				-0.8
3,868,485	+	yciZ	HEPCGN_25670	0.20	+0.6
3,868,522	+	yciZ	HEPCGN_25670	0.41	+0.0
3,868,569	+	yciZ	HEPCGN_25670	0.68	+0.0
3,868,722	-				-0.9
3,868,727	-				-0.7
3,868,729	-				+0.9
3,868,730	+				+1.0
3,868,730	+				-0.3
3,868,730	+				-1.3
3,868,753	+				-1.2
3,868,753	+				+0.3
3,868,753	+				+0.5
3,868,754	-				-0.2
3,868,755	+				+0.3
3,868,760	-				+0.2
3,868,760	-				+0.0
3,869,098	-	pdeR	HEPCGN_25675	0.17	+0.9
3,869,098	-	pdeR	HEPCGN_25675	0.17	+0.5
3,869,282	+	pdeR	HEPCGN_25675	0.26	+0.4
3,869,285	+	pdeR	HEPCGN_25675	0.26	-0.4
3,869,355	+	pdeR	HEPCGN_25675	0.29	+0.9
3,869,356	-	pdeR	HEPCGN_25675	0.30	-0.0
3,869,427	+	pdeR	HEPCGN_25675	0.33	-2.0
3,869,427	+	pdeR	HEPCGN_25675	0.33	+1.6
3,869,428	-	pdeR	HEPCGN_25675	0.33	-0.1
3,869,431	-	pdeR	HEPCGN_25675	0.33	+1.0
3,869,431	-	pdeR	HEPCGN_25675	0.33	-0.3
3,869,513	+	pdeR	HEPCGN_25675	0.37	-0.1
3,869,612	-	pdeR	HEPCGN_25675	0.42	-0.1
3,869,640	-	pdeR	HEPCGN_25675	0.44	+0.0
3,869,679	-	pdeR	HEPCGN_25675	0.46	-3.1
3,869,699	-	pdeR	HEPCGN_25675	0.47	+0.0
3,869,699	-	pdeR	HEPCGN_25675	0.47	-0.3
3,869,709	+	pdeR	HEPCGN_25675	0.47	+0.5
3,869,853	+	pdeR	HEPCGN_25675	0.55	-1.5
3,870,053	+	pdeR	HEPCGN_25675	0.65	-0.6
3,870,208	+	pdeR	HEPCGN_25675	0.72	-1.5
3,870,329	-	pdeR	HEPCGN_25675	0.78	-0.2
3,870,438	+	pdeR	HEPCGN_25675	0.84	+1.6
3,870,439	-	pdeR	HEPCGN_25675	0.84	+0.6
3,870,630	-				+0.2
3,870,630	-				+0.9
3,870,724	+				+0.0
3,870,724	+				-0.8
3,870,725	-				-0.3
3,870,725	-				+0.1
3,870,763	-				+0.1
3,870,815	+				-0.7
3,870,816	-				+0.4
3,870,816	-				-1.4
3,870,853	-				+0.6
3,870,856	+				-0.5
3,870,856	+				+0.1
3,871,071	-				-0.4
3,871,096	-				+0.9
3,871,179	-				+1.2
3,871,276	+	rnb	HEPCGN_25680	0.15	+0.0
3,871,278	+	rnb	HEPCGN_25680	0.15	-0.4
3,871,421	-	rnb	HEPCGN_25680	0.22	+0.9
3,871,450	+	rnb	HEPCGN_25680	0.24	+1.6
3,871,687	+	rnb	HEPCGN_25680	0.36	+2.2
3,871,688	-	rnb	HEPCGN_25680	0.36	-1.0