Strain Fitness in Escherichia coli ECOR38 around HEPCGN_20690

Experiment: Bas19

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas19
2,878,575	-				+0.6
2,878,621	+	yphC	HEPCGN_20685	0.13	-0.0
2,878,622	-	yphC	HEPCGN_20685	0.13	-1.7
2,878,622	-	yphC	HEPCGN_20685	0.13	+0.1
2,878,623	+	yphC	HEPCGN_20685	0.13	-0.1
2,878,623	+	yphC	HEPCGN_20685	0.13	-0.1
2,878,624	-	yphC	HEPCGN_20685	0.13	-0.6
2,878,624	-	yphC	HEPCGN_20685	0.13	+0.2
2,878,627	+	yphC	HEPCGN_20685	0.13	+1.1
2,878,627	+	yphC	HEPCGN_20685	0.13	+0.2
2,878,684	-	yphC	HEPCGN_20685	0.19	+1.4
2,878,684	-	yphC	HEPCGN_20685	0.19	-0.0
2,878,769	-	yphC	HEPCGN_20685	0.27	-0.3
2,878,769	-	yphC	HEPCGN_20685	0.27	+0.5
2,878,819	-	yphC	HEPCGN_20685	0.31	+0.9
2,878,882	+	yphC	HEPCGN_20685	0.37	+0.8
2,878,934	-	yphC	HEPCGN_20685	0.42	-0.3
2,878,968	+	yphC	HEPCGN_20685	0.45	+0.1
2,878,968	+	yphC	HEPCGN_20685	0.45	+0.5
2,878,975	+	yphC	HEPCGN_20685	0.46	-0.8
2,878,975	+	yphC	HEPCGN_20685	0.46	-0.5
2,878,975	+	yphC	HEPCGN_20685	0.46	+0.1
2,878,976	-	yphC	HEPCGN_20685	0.46	-0.1
2,879,103	+	yphC	HEPCGN_20685	0.58	-0.5
2,879,104	-	yphC	HEPCGN_20685	0.58	-0.8
2,879,138	+	yphC	HEPCGN_20685	0.61	+0.7
2,879,139	-	yphC	HEPCGN_20685	0.61	-0.4
2,879,158	+	yphC	HEPCGN_20685	0.63	+0.2
2,879,163	-	yphC	HEPCGN_20685	0.64	-0.1
2,879,492	-				+0.1
2,879,546	-				+0.3
2,879,546	-				+0.9
2,879,568	+				-0.1
2,879,568	+				-0.4
2,879,568	+				-0.3
2,879,569	-				-0.2
2,879,571	-				+0.2
2,879,571	-				+0.2
2,879,575	+				-0.4
2,879,575	+				+1.1
2,879,575	+				-0.8
2,879,590	+				-0.1
2,879,656	+	yphB	HEPCGN_20690	0.11	-0.3
2,879,856	-	yphB	HEPCGN_20690	0.34	+0.3
2,879,856	-	yphB	HEPCGN_20690	0.34	-0.3
2,879,871	+	yphB	HEPCGN_20690	0.36	-0.1
2,879,872	-	yphB	HEPCGN_20690	0.36	+0.1
2,879,872	-	yphB	HEPCGN_20690	0.36	-0.3
2,879,893	-	yphB	HEPCGN_20690	0.38	-0.4
2,880,252	+	yphB	HEPCGN_20690	0.79	+0.2
2,880,253	-	yphB	HEPCGN_20690	0.79	-0.5
2,880,424	+				+0.1
2,880,435	-				+0.0
2,880,545	-	doxX	HEPCGN_20695	0.16	+0.1
2,880,571	+	doxX	HEPCGN_20695	0.22	+0.2
2,880,629	-	doxX	HEPCGN_20695	0.35	+0.6
2,880,690	-	doxX	HEPCGN_20695	0.50	+0.0
2,880,766	+	doxX	HEPCGN_20695	0.68	+0.8
2,880,767	-	doxX	HEPCGN_20695	0.68	+0.4
2,880,767	-	doxX	HEPCGN_20695	0.68	-0.6
2,880,768	+	doxX	HEPCGN_20695	0.68	-0.2
2,880,769	-	doxX	HEPCGN_20695	0.69	+0.6
2,880,769	-	doxX	HEPCGN_20695	0.69	-1.3
2,880,769	-	doxX	HEPCGN_20695	0.69	-0.1
2,880,769	-	doxX	HEPCGN_20695	0.69	+0.3
2,880,851	+	doxX	HEPCGN_20695	0.88	-0.3
2,880,885	+				-0.3
2,880,890	+				-1.0
2,880,890	+				+0.6
2,880,901	+				-1.4
2,880,922	-				+0.1
2,880,931	+				+0.9
2,880,932	-				+0.3
2,880,937	+				-0.2
2,880,940	+				-0.5
2,880,941	-				+2.3
2,880,986	+				-0.7
2,881,000	-				-0.2
2,881,010	-				-0.6
2,881,010	-				-0.5
2,881,217	+	hcaD	HEPCGN_20700	0.18	+0.8
2,881,222	+	hcaD	HEPCGN_20700	0.19	-0.5
2,881,223	-	hcaD	HEPCGN_20700	0.19	-0.7
2,881,223	-	hcaD	HEPCGN_20700	0.19	+0.5
2,881,223	-	hcaD	HEPCGN_20700	0.19	-0.5
2,881,231	-	hcaD	HEPCGN_20700	0.19	-0.7
2,881,354	+	hcaD	HEPCGN_20700	0.30	-0.4