Experiment: Bas19
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yihO and ompL are separated by 66 nucleotides ompL and yihN are separated by 91 nucleotides
HEPCGN_12690: yihO - Putative sulfoquinovose importer, at 1,288,618 to 1,290,021
yihO
HEPCGN_12695: ompL - porin OmpL, at 1,290,088 to 1,290,780
ompL
HEPCGN_12700: yihN - Inner membrane protein YihN, at 1,290,872 to 1,292,137
yihN
Position (kb) 1290
1291 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1289.109 kb on - strand, within yihO at 1289.129 kb on + strand, within yihO at 1289.137 kb on - strand, within yihO at 1289.233 kb on + strand, within yihO at 1289.254 kb on + strand, within yihO at 1289.280 kb on + strand, within yihO at 1289.280 kb on + strand, within yihO at 1289.280 kb on + strand, within yihO at 1289.484 kb on - strand, within yihO at 1289.527 kb on + strand, within yihO at 1289.674 kb on - strand, within yihO at 1289.727 kb on + strand, within yihO at 1289.735 kb on - strand, within yihO at 1289.736 kb on + strand, within yihO at 1289.736 kb on + strand, within yihO at 1289.736 kb on + strand, within yihO at 1289.737 kb on - strand, within yihO at 1289.737 kb on - strand, within yihO at 1289.787 kb on + strand, within yihO at 1290.246 kb on + strand, within ompL at 1290.246 kb on + strand, within ompL at 1290.247 kb on - strand, within ompL at 1290.373 kb on - strand, within ompL at 1290.417 kb on + strand, within ompL at 1290.457 kb on - strand, within ompL at 1290.475 kb on - strand, within ompL at 1290.710 kb on + strand, within ompL at 1290.730 kb on + strand at 1290.784 kb on - strand at 1290.830 kb on + strand at 1290.873 kb on + strand at 1290.914 kb on - strand at 1291.008 kb on - strand, within yihN at 1291.020 kb on + strand, within yihN at 1291.026 kb on + strand, within yihN at 1291.123 kb on + strand, within yihN at 1291.177 kb on + strand, within yihN at 1291.177 kb on + strand, within yihN at 1291.177 kb on + strand, within yihN at 1291.191 kb on - strand, within yihN at 1291.195 kb on - strand, within yihN at 1291.205 kb on - strand, within yihN at 1291.222 kb on + strand, within yihN at 1291.222 kb on + strand, within yihN at 1291.223 kb on - strand, within yihN at 1291.233 kb on - strand, within yihN at 1291.256 kb on - strand, within yihN at 1291.264 kb on - strand, within yihN at 1291.268 kb on + strand, within yihN at 1291.269 kb on - strand, within yihN at 1291.273 kb on - strand, within yihN at 1291.276 kb on + strand, within yihN at 1291.297 kb on + strand, within yihN at 1291.388 kb on + strand, within yihN at 1291.389 kb on - strand, within yihN at 1291.393 kb on - strand, within yihN at 1291.393 kb on - strand, within yihN at 1291.505 kb on - strand, within yihN at 1291.589 kb on - strand, within yihN at 1291.617 kb on + strand, within yihN
Per-strain Table
Position Strand Gene LocusTag Fraction Bas19 remove 1,289,109 - yihO HEPCGN_12690 0.35 -0.0 1,289,129 + yihO HEPCGN_12690 0.36 +0.3 1,289,137 - yihO HEPCGN_12690 0.37 +1.9 1,289,233 + yihO HEPCGN_12690 0.44 +0.7 1,289,254 + yihO HEPCGN_12690 0.45 +0.5 1,289,280 + yihO HEPCGN_12690 0.47 -0.8 1,289,280 + yihO HEPCGN_12690 0.47 -1.9 1,289,280 + yihO HEPCGN_12690 0.47 -0.1 1,289,484 - yihO HEPCGN_12690 0.62 +0.2 1,289,527 + yihO HEPCGN_12690 0.65 -1.0 1,289,674 - yihO HEPCGN_12690 0.75 +1.0 1,289,727 + yihO HEPCGN_12690 0.79 -0.4 1,289,735 - yihO HEPCGN_12690 0.80 +0.4 1,289,736 + yihO HEPCGN_12690 0.80 +0.4 1,289,736 + yihO HEPCGN_12690 0.80 -0.1 1,289,736 + yihO HEPCGN_12690 0.80 +1.0 1,289,737 - yihO HEPCGN_12690 0.80 +0.6 1,289,737 - yihO HEPCGN_12690 0.80 -0.2 1,289,787 + yihO HEPCGN_12690 0.83 -0.3 1,290,246 + ompL HEPCGN_12695 0.23 +0.6 1,290,246 + ompL HEPCGN_12695 0.23 +0.9 1,290,247 - ompL HEPCGN_12695 0.23 +0.1 1,290,373 - ompL HEPCGN_12695 0.41 +0.6 1,290,417 + ompL HEPCGN_12695 0.47 +0.4 1,290,457 - ompL HEPCGN_12695 0.53 -0.1 1,290,475 - ompL HEPCGN_12695 0.56 -1.3 1,290,710 + ompL HEPCGN_12695 0.90 +0.2 1,290,730 + -0.1 1,290,784 - -0.4 1,290,830 + +0.6 1,290,873 + +0.2 1,290,914 - -0.3 1,291,008 - yihN HEPCGN_12700 0.11 +0.6 1,291,020 + yihN HEPCGN_12700 0.12 -0.1 1,291,026 + yihN HEPCGN_12700 0.12 -0.1 1,291,123 + yihN HEPCGN_12700 0.20 -1.0 1,291,177 + yihN HEPCGN_12700 0.24 -0.9 1,291,177 + yihN HEPCGN_12700 0.24 -0.2 1,291,177 + yihN HEPCGN_12700 0.24 -0.0 1,291,191 - yihN HEPCGN_12700 0.25 +0.9 1,291,195 - yihN HEPCGN_12700 0.26 -0.6 1,291,205 - yihN HEPCGN_12700 0.26 -0.2 1,291,222 + yihN HEPCGN_12700 0.28 -0.6 1,291,222 + yihN HEPCGN_12700 0.28 -0.1 1,291,223 - yihN HEPCGN_12700 0.28 +0.6 1,291,233 - yihN HEPCGN_12700 0.29 +0.6 1,291,256 - yihN HEPCGN_12700 0.30 +0.6 1,291,264 - yihN HEPCGN_12700 0.31 -0.4 1,291,268 + yihN HEPCGN_12700 0.31 -0.6 1,291,269 - yihN HEPCGN_12700 0.31 -0.5 1,291,273 - yihN HEPCGN_12700 0.32 +0.8 1,291,276 + yihN HEPCGN_12700 0.32 +1.0 1,291,297 + yihN HEPCGN_12700 0.34 -0.5 1,291,388 + yihN HEPCGN_12700 0.41 +0.4 1,291,389 - yihN HEPCGN_12700 0.41 -0.7 1,291,393 - yihN HEPCGN_12700 0.41 +0.2 1,291,393 - yihN HEPCGN_12700 0.41 -0.1 1,291,505 - yihN HEPCGN_12700 0.50 -0.1 1,291,589 - yihN HEPCGN_12700 0.57 +0.6 1,291,617 + yihN HEPCGN_12700 0.59 +0.7
Or see this region's nucleotide sequence