Experiment: Bas19
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjfM and yjfL are separated by 9 nucleotides yjfL and HEPCGN_10430 are separated by 17 nucleotides HEPCGN_10430 and yjfJ are separated by 49 nucleotides yjfJ and yjfI are separated by 18 nucleotides
HEPCGN_10420: yjfM - Uncharacterized protein YjfM, at 827,035 to 827,673
yjfM
HEPCGN_10425: yjfL - UPF0719 inner membrane protein YjfL, at 827,683 to 828,081
yjfL
HEPCGN_10430: HEPCGN_10430 - DUF2491 domain-containing protein, at 828,099 to 828,758
_10430
HEPCGN_10435: yjfJ - Uncharacterized protein YjfJ, at 828,808 to 829,506
yjfJ
HEPCGN_10440: yjfI - Uncharacterized protein YjfI, at 829,525 to 829,926
yjfI
Position (kb) 828
829 Strain fitness (log2 ratio) -1
0
1
2
3 at 827.113 kb on - strand, within yjfM at 827.113 kb on - strand, within yjfM at 827.316 kb on - strand, within yjfM at 827.316 kb on - strand, within yjfM at 827.334 kb on + strand, within yjfM at 827.359 kb on - strand, within yjfM at 827.378 kb on + strand, within yjfM at 827.418 kb on + strand, within yjfM at 827.427 kb on + strand, within yjfM at 827.442 kb on + strand, within yjfM at 827.555 kb on - strand, within yjfM at 827.555 kb on - strand, within yjfM at 827.739 kb on + strand, within yjfL at 827.767 kb on - strand, within yjfL at 827.793 kb on + strand, within yjfL at 827.793 kb on + strand, within yjfL at 827.795 kb on + strand, within yjfL at 827.795 kb on + strand, within yjfL at 827.922 kb on + strand, within yjfL at 828.073 kb on + strand at 828.110 kb on + strand at 828.221 kb on + strand, within HEPCGN_10430 at 828.385 kb on - strand, within HEPCGN_10430 at 828.445 kb on + strand, within HEPCGN_10430 at 828.473 kb on + strand, within HEPCGN_10430 at 828.492 kb on - strand, within HEPCGN_10430 at 828.541 kb on + strand, within HEPCGN_10430 at 828.544 kb on + strand, within HEPCGN_10430 at 828.599 kb on + strand, within HEPCGN_10430 at 828.601 kb on + strand, within HEPCGN_10430 at 828.601 kb on + strand, within HEPCGN_10430 at 828.601 kb on + strand, within HEPCGN_10430 at 828.602 kb on - strand, within HEPCGN_10430 at 828.720 kb on - strand at 828.720 kb on - strand at 828.758 kb on + strand at 828.758 kb on + strand at 828.770 kb on - strand at 828.775 kb on - strand at 828.838 kb on + strand at 828.841 kb on + strand at 828.841 kb on + strand at 828.842 kb on - strand at 828.842 kb on - strand at 828.861 kb on + strand at 829.032 kb on + strand, within yjfJ at 829.074 kb on + strand, within yjfJ at 829.075 kb on - strand, within yjfJ at 829.486 kb on + strand at 829.720 kb on - strand, within yjfI
Per-strain Table
Position Strand Gene LocusTag Fraction Bas19 remove 827,113 - yjfM HEPCGN_10420 0.12 -1.4 827,113 - yjfM HEPCGN_10420 0.12 -1.4 827,316 - yjfM HEPCGN_10420 0.44 +0.8 827,316 - yjfM HEPCGN_10420 0.44 +3.4 827,334 + yjfM HEPCGN_10420 0.47 -0.2 827,359 - yjfM HEPCGN_10420 0.51 -0.0 827,378 + yjfM HEPCGN_10420 0.54 -1.2 827,418 + yjfM HEPCGN_10420 0.60 -0.5 827,427 + yjfM HEPCGN_10420 0.61 -0.9 827,442 + yjfM HEPCGN_10420 0.64 -0.0 827,555 - yjfM HEPCGN_10420 0.81 +0.7 827,555 - yjfM HEPCGN_10420 0.81 -0.3 827,739 + yjfL HEPCGN_10425 0.14 +1.4 827,767 - yjfL HEPCGN_10425 0.21 +0.2 827,793 + yjfL HEPCGN_10425 0.28 -0.6 827,793 + yjfL HEPCGN_10425 0.28 +1.0 827,795 + yjfL HEPCGN_10425 0.28 -0.0 827,795 + yjfL HEPCGN_10425 0.28 -0.3 827,922 + yjfL HEPCGN_10425 0.60 -0.3 828,073 + -0.5 828,110 + +0.1 828,221 + HEPCGN_10430 0.18 +0.1 828,385 - HEPCGN_10430 0.43 -0.6 828,445 + HEPCGN_10430 0.52 +1.0 828,473 + HEPCGN_10430 0.57 +0.1 828,492 - HEPCGN_10430 0.60 +0.6 828,541 + HEPCGN_10430 0.67 +0.3 828,544 + HEPCGN_10430 0.67 +0.1 828,599 + HEPCGN_10430 0.76 -0.4 828,601 + HEPCGN_10430 0.76 -0.1 828,601 + HEPCGN_10430 0.76 +0.0 828,601 + HEPCGN_10430 0.76 -0.7 828,602 - HEPCGN_10430 0.76 -0.2 828,720 - -1.5 828,720 - +0.2 828,758 + +0.1 828,758 + -0.6 828,770 - +0.7 828,775 - +0.3 828,838 + +0.3 828,841 + -1.5 828,841 + -0.3 828,842 - -0.4 828,842 - +0.5 828,861 + -1.1 829,032 + yjfJ HEPCGN_10435 0.32 -0.5 829,074 + yjfJ HEPCGN_10435 0.38 +0.1 829,075 - yjfJ HEPCGN_10435 0.38 -1.4 829,486 + -0.1 829,720 - yjfI HEPCGN_10440 0.49 -0.4
Or see this region's nucleotide sequence