Experiment: Bas19
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ltrA and HEPCGN_09795 are separated by 650 nucleotides HEPCGN_09795 and fecE are separated by 557 nucleotides
HEPCGN_09790: ltrA - group II intron reverse transcriptase/maturase, at 702,982 to 704,505
ltrA
HEPCGN_09795: HEPCGN_09795 - KpLE2 phage-like element, at 705,156 to 705,413
_09795
HEPCGN_09800: fecE - Fe(3+) dicitrate ABC transporter ATP-binding protein FecE, at 705,971 to 706,738
fecE
Position (kb) 705
706 Strain fitness (log2 ratio) -2
-1
0
1
2 at 704.588 kb on + strand at 704.696 kb on + strand at 704.779 kb on + strand at 704.779 kb on + strand at 704.780 kb on - strand at 704.919 kb on - strand at 704.919 kb on - strand at 704.919 kb on - strand at 704.922 kb on + strand at 704.922 kb on + strand at 704.922 kb on + strand at 704.922 kb on + strand at 704.922 kb on + strand at 704.922 kb on + strand at 704.923 kb on - strand at 704.923 kb on - strand at 704.923 kb on - strand at 704.923 kb on - strand at 704.923 kb on - strand at 704.923 kb on - strand at 704.923 kb on - strand at 704.923 kb on - strand at 704.923 kb on - strand at 704.957 kb on + strand at 704.958 kb on - strand at 704.958 kb on - strand at 704.958 kb on - strand at 704.959 kb on + strand at 704.960 kb on - strand at 704.972 kb on + strand at 704.972 kb on + strand at 704.973 kb on - strand at 704.998 kb on + strand at 704.998 kb on + strand at 704.998 kb on + strand at 705.035 kb on + strand at 705.067 kb on + strand at 705.068 kb on - strand at 705.109 kb on + strand at 705.121 kb on + strand at 705.244 kb on - strand, within HEPCGN_09795 at 705.374 kb on + strand, within HEPCGN_09795 at 705.374 kb on + strand, within HEPCGN_09795 at 705.409 kb on + strand at 705.409 kb on + strand at 705.410 kb on - strand at 705.410 kb on - strand at 705.410 kb on - strand at 705.411 kb on + strand at 705.430 kb on + strand at 705.445 kb on + strand at 705.449 kb on + strand at 705.449 kb on + strand at 705.449 kb on + strand at 705.450 kb on - strand at 705.450 kb on - strand at 705.450 kb on - strand at 705.450 kb on - strand at 705.450 kb on - strand at 705.453 kb on + strand at 705.454 kb on - strand at 705.659 kb on - strand at 705.659 kb on - strand at 705.659 kb on - strand at 705.659 kb on - strand at 705.721 kb on + strand at 705.723 kb on + strand at 705.723 kb on + strand at 705.723 kb on + strand at 705.723 kb on + strand at 705.800 kb on + strand at 705.823 kb on - strand at 705.862 kb on + strand at 705.868 kb on + strand at 705.972 kb on + strand at 705.981 kb on - strand at 706.017 kb on - strand at 706.017 kb on - strand at 706.144 kb on + strand, within fecE at 706.236 kb on + strand, within fecE at 706.237 kb on - strand, within fecE at 706.256 kb on + strand, within fecE at 706.257 kb on - strand, within fecE at 706.257 kb on - strand, within fecE at 706.257 kb on - strand, within fecE at 706.259 kb on + strand, within fecE at 706.382 kb on - strand, within fecE at 706.382 kb on - strand, within fecE
Per-strain Table
Position Strand Gene LocusTag Fraction Bas19 remove 704,588 + -1.7 704,696 + -1.1 704,779 + -0.2 704,779 + +0.7 704,780 - +0.5 704,919 - +0.2 704,919 - -0.3 704,919 - +0.2 704,922 + -0.4 704,922 + +0.9 704,922 + -1.1 704,922 + +0.2 704,922 + +0.1 704,922 + -0.8 704,923 - +0.1 704,923 - +0.5 704,923 - -0.7 704,923 - -0.1 704,923 - +0.0 704,923 - +0.3 704,923 - -0.4 704,923 - +0.6 704,923 - +2.3 704,957 + +0.4 704,958 - -0.3 704,958 - -0.5 704,958 - -0.6 704,959 + +1.5 704,960 - -0.3 704,972 + +0.9 704,972 + -0.2 704,973 - +0.4 704,998 + +0.5 704,998 + +0.1 704,998 + -0.7 705,035 + +0.5 705,067 + -0.6 705,068 - -0.3 705,109 + +0.3 705,121 + +0.5 705,244 - HEPCGN_09795 0.34 -2.0 705,374 + HEPCGN_09795 0.84 +1.9 705,374 + HEPCGN_09795 0.84 -0.5 705,409 + -1.7 705,409 + -0.0 705,410 - -0.4 705,410 - +0.3 705,410 - +0.4 705,411 + -0.7 705,430 + -0.8 705,445 + +0.0 705,449 + -1.3 705,449 + -0.5 705,449 + +0.0 705,450 - +0.5 705,450 - -0.7 705,450 - -0.3 705,450 - -0.4 705,450 - -0.6 705,453 + -0.7 705,454 - +0.5 705,659 - +1.0 705,659 - -0.9 705,659 - -0.0 705,659 - -0.3 705,721 + -0.5 705,723 + -0.2 705,723 + -0.1 705,723 + +0.0 705,723 + +0.3 705,800 + -1.0 705,823 - +0.7 705,862 + -1.0 705,868 + -0.3 705,972 + -1.0 705,981 - +0.1 706,017 - +0.2 706,017 - -1.3 706,144 + fecE HEPCGN_09800 0.23 -0.7 706,236 + fecE HEPCGN_09800 0.35 -0.2 706,237 - fecE HEPCGN_09800 0.35 -0.0 706,256 + fecE HEPCGN_09800 0.37 +0.5 706,257 - fecE HEPCGN_09800 0.37 -0.5 706,257 - fecE HEPCGN_09800 0.37 -0.4 706,257 - fecE HEPCGN_09800 0.37 -0.5 706,259 + fecE HEPCGN_09800 0.38 -2.1 706,382 - fecE HEPCGN_09800 0.54 +0.7 706,382 - fecE HEPCGN_09800 0.54 +0.1
Or see this region's nucleotide sequence