Experiment: Bas19
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_09085 and yaaJ are separated by 278 nucleotides yaaJ and yaaA are separated by 69 nucleotides yaaA and yaaX are separated by 39 nucleotides
HEPCGN_09085: HEPCGN_09085 - transaldolase B, at 563,546 to 564,499
_09085
HEPCGN_09090: yaaJ - Uncharacterized transporter YaaJ, at 564,778 to 566,208
yaaJ
HEPCGN_09095: yaaA - peroxide stress protein YaaA, at 566,278 to 567,054
yaaA
HEPCGN_09100: yaaX - Uncharacterized protein YaaX, at 567,094 to 567,390
yaaX
Position (kb) 564
565
566
567 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 563.816 kb on - strand, within HEPCGN_09085 at 563.863 kb on - strand, within HEPCGN_09085 at 563.865 kb on + strand, within HEPCGN_09085 at 563.871 kb on + strand, within HEPCGN_09085 at 563.871 kb on + strand, within HEPCGN_09085 at 563.956 kb on + strand, within HEPCGN_09085 at 563.957 kb on - strand, within HEPCGN_09085 at 564.040 kb on + strand, within HEPCGN_09085 at 564.094 kb on + strand, within HEPCGN_09085 at 564.128 kb on - strand, within HEPCGN_09085 at 564.128 kb on - strand, within HEPCGN_09085 at 564.145 kb on - strand, within HEPCGN_09085 at 564.193 kb on - strand, within HEPCGN_09085 at 564.264 kb on - strand, within HEPCGN_09085 at 564.468 kb on + strand at 564.503 kb on - strand at 564.503 kb on - strand at 564.506 kb on - strand at 564.506 kb on - strand at 564.537 kb on + strand at 564.537 kb on + strand at 564.672 kb on + strand at 564.673 kb on - strand at 564.673 kb on - strand at 564.673 kb on - strand at 564.673 kb on - strand at 564.673 kb on - strand at 564.702 kb on + strand at 564.707 kb on + strand at 564.707 kb on + strand at 564.707 kb on + strand at 564.708 kb on - strand at 564.708 kb on - strand at 564.708 kb on - strand at 564.709 kb on + strand at 564.710 kb on - strand at 564.711 kb on + strand at 564.711 kb on + strand at 564.711 kb on + strand at 564.719 kb on - strand at 564.773 kb on + strand at 564.798 kb on + strand at 564.833 kb on - strand at 564.924 kb on + strand, within yaaJ at 564.973 kb on - strand, within yaaJ at 565.123 kb on + strand, within yaaJ at 565.171 kb on + strand, within yaaJ at 565.171 kb on + strand, within yaaJ at 565.171 kb on + strand, within yaaJ at 565.171 kb on + strand, within yaaJ at 565.172 kb on - strand, within yaaJ at 565.173 kb on + strand, within yaaJ at 565.244 kb on + strand, within yaaJ at 565.326 kb on + strand, within yaaJ at 565.439 kb on + strand, within yaaJ at 565.538 kb on - strand, within yaaJ at 565.540 kb on - strand, within yaaJ at 565.540 kb on - strand, within yaaJ at 565.545 kb on - strand, within yaaJ at 565.545 kb on - strand, within yaaJ at 565.557 kb on + strand, within yaaJ at 565.578 kb on + strand, within yaaJ at 565.578 kb on + strand, within yaaJ at 565.579 kb on - strand, within yaaJ at 565.733 kb on + strand, within yaaJ at 565.733 kb on + strand, within yaaJ at 565.734 kb on - strand, within yaaJ at 565.756 kb on + strand, within yaaJ at 565.756 kb on + strand, within yaaJ at 565.756 kb on + strand, within yaaJ at 565.757 kb on - strand, within yaaJ at 565.757 kb on - strand, within yaaJ at 565.757 kb on - strand, within yaaJ at 565.773 kb on + strand, within yaaJ at 565.880 kb on - strand, within yaaJ at 565.880 kb on - strand, within yaaJ at 565.886 kb on - strand, within yaaJ at 565.911 kb on - strand, within yaaJ at 565.911 kb on - strand, within yaaJ at 565.986 kb on - strand, within yaaJ at 566.017 kb on - strand, within yaaJ at 566.017 kb on - strand, within yaaJ at 566.021 kb on + strand, within yaaJ at 566.021 kb on + strand, within yaaJ at 566.022 kb on - strand, within yaaJ at 566.022 kb on - strand, within yaaJ at 566.022 kb on - strand, within yaaJ at 566.038 kb on - strand, within yaaJ at 566.057 kb on + strand, within yaaJ at 566.057 kb on + strand, within yaaJ at 566.083 kb on - strand at 566.098 kb on + strand at 566.099 kb on - strand at 566.102 kb on + strand at 566.103 kb on - strand at 566.103 kb on - strand at 566.289 kb on + strand at 566.290 kb on - strand at 566.416 kb on - strand, within yaaA at 566.527 kb on - strand, within yaaA at 566.724 kb on + strand, within yaaA at 566.724 kb on + strand, within yaaA at 566.724 kb on + strand, within yaaA at 566.725 kb on - strand, within yaaA at 566.725 kb on - strand, within yaaA at 566.800 kb on + strand, within yaaA at 566.801 kb on - strand, within yaaA at 566.801 kb on - strand, within yaaA at 566.806 kb on - strand, within yaaA at 566.897 kb on - strand, within yaaA at 566.976 kb on + strand, within yaaA at 566.989 kb on + strand at 566.989 kb on + strand at 567.053 kb on - strand at 567.091 kb on + strand at 567.092 kb on - strand at 567.092 kb on - strand at 567.092 kb on - strand at 567.154 kb on - strand, within yaaX
Per-strain Table
Position Strand Gene LocusTag Fraction Bas19 remove 563,816 - HEPCGN_09085 0.28 -0.2 563,863 - HEPCGN_09085 0.33 -2.7 563,865 + HEPCGN_09085 0.33 -0.3 563,871 + HEPCGN_09085 0.34 +0.6 563,871 + HEPCGN_09085 0.34 +0.7 563,956 + HEPCGN_09085 0.43 -0.8 563,957 - HEPCGN_09085 0.43 -0.2 564,040 + HEPCGN_09085 0.52 +1.0 564,094 + HEPCGN_09085 0.57 -1.3 564,128 - HEPCGN_09085 0.61 +2.9 564,128 - HEPCGN_09085 0.61 +0.6 564,145 - HEPCGN_09085 0.63 -0.5 564,193 - HEPCGN_09085 0.68 -0.2 564,264 - HEPCGN_09085 0.75 -1.4 564,468 + -1.1 564,503 - +0.7 564,503 - -0.9 564,506 - -1.2 564,506 - +0.1 564,537 + -0.6 564,537 + +0.3 564,672 + +0.1 564,673 - -0.2 564,673 - -0.1 564,673 - -1.4 564,673 - -0.2 564,673 - +0.1 564,702 + +0.4 564,707 + -0.4 564,707 + +0.5 564,707 + +1.3 564,708 - +0.4 564,708 - +0.4 564,708 - +0.2 564,709 + -0.5 564,710 - -0.4 564,711 + -0.1 564,711 + +0.6 564,711 + -0.3 564,719 - -1.6 564,773 + +0.0 564,798 + +0.5 564,833 - -0.3 564,924 + yaaJ HEPCGN_09090 0.10 +0.3 564,973 - yaaJ HEPCGN_09090 0.14 +0.1 565,123 + yaaJ HEPCGN_09090 0.24 +0.2 565,171 + yaaJ HEPCGN_09090 0.27 -0.0 565,171 + yaaJ HEPCGN_09090 0.27 +0.4 565,171 + yaaJ HEPCGN_09090 0.27 +0.5 565,171 + yaaJ HEPCGN_09090 0.27 -0.4 565,172 - yaaJ HEPCGN_09090 0.28 +0.0 565,173 + yaaJ HEPCGN_09090 0.28 -1.0 565,244 + yaaJ HEPCGN_09090 0.33 -1.2 565,326 + yaaJ HEPCGN_09090 0.38 -1.0 565,439 + yaaJ HEPCGN_09090 0.46 -0.6 565,538 - yaaJ HEPCGN_09090 0.53 -0.3 565,540 - yaaJ HEPCGN_09090 0.53 -0.8 565,540 - yaaJ HEPCGN_09090 0.53 +0.7 565,545 - yaaJ HEPCGN_09090 0.54 -2.5 565,545 - yaaJ HEPCGN_09090 0.54 +0.9 565,557 + yaaJ HEPCGN_09090 0.54 -0.1 565,578 + yaaJ HEPCGN_09090 0.56 -0.1 565,578 + yaaJ HEPCGN_09090 0.56 -1.4 565,579 - yaaJ HEPCGN_09090 0.56 -2.0 565,733 + yaaJ HEPCGN_09090 0.67 +0.1 565,733 + yaaJ HEPCGN_09090 0.67 -0.0 565,734 - yaaJ HEPCGN_09090 0.67 -0.5 565,756 + yaaJ HEPCGN_09090 0.68 -2.4 565,756 + yaaJ HEPCGN_09090 0.68 +0.3 565,756 + yaaJ HEPCGN_09090 0.68 +0.6 565,757 - yaaJ HEPCGN_09090 0.68 -0.0 565,757 - yaaJ HEPCGN_09090 0.68 -1.0 565,757 - yaaJ HEPCGN_09090 0.68 +0.3 565,773 + yaaJ HEPCGN_09090 0.70 +0.7 565,880 - yaaJ HEPCGN_09090 0.77 -0.7 565,880 - yaaJ HEPCGN_09090 0.77 +0.8 565,886 - yaaJ HEPCGN_09090 0.77 +2.3 565,911 - yaaJ HEPCGN_09090 0.79 -0.0 565,911 - yaaJ HEPCGN_09090 0.79 -0.1 565,986 - yaaJ HEPCGN_09090 0.84 +0.1 566,017 - yaaJ HEPCGN_09090 0.87 +0.3 566,017 - yaaJ HEPCGN_09090 0.87 +0.5 566,021 + yaaJ HEPCGN_09090 0.87 -0.3 566,021 + yaaJ HEPCGN_09090 0.87 -0.2 566,022 - yaaJ HEPCGN_09090 0.87 -0.3 566,022 - yaaJ HEPCGN_09090 0.87 +0.1 566,022 - yaaJ HEPCGN_09090 0.87 -0.5 566,038 - yaaJ HEPCGN_09090 0.88 -0.1 566,057 + yaaJ HEPCGN_09090 0.89 +0.5 566,057 + yaaJ HEPCGN_09090 0.89 +0.2 566,083 - -0.0 566,098 + +0.3 566,099 - -0.1 566,102 + -0.0 566,103 - -0.2 566,103 - +0.2 566,289 + -1.0 566,290 - +0.3 566,416 - yaaA HEPCGN_09095 0.18 -0.6 566,527 - yaaA HEPCGN_09095 0.32 +0.2 566,724 + yaaA HEPCGN_09095 0.57 -0.6 566,724 + yaaA HEPCGN_09095 0.57 -0.0 566,724 + yaaA HEPCGN_09095 0.57 -0.3 566,725 - yaaA HEPCGN_09095 0.58 -0.2 566,725 - yaaA HEPCGN_09095 0.58 -0.8 566,800 + yaaA HEPCGN_09095 0.67 -1.6 566,801 - yaaA HEPCGN_09095 0.67 +0.6 566,801 - yaaA HEPCGN_09095 0.67 +0.2 566,806 - yaaA HEPCGN_09095 0.68 -0.3 566,897 - yaaA HEPCGN_09095 0.80 -1.0 566,976 + yaaA HEPCGN_09095 0.90 +0.4 566,989 + +3.1 566,989 + +0.6 567,053 - -1.1 567,091 + +1.0 567,092 - +0.3 567,092 - +1.5 567,092 - +0.2 567,154 - yaaX HEPCGN_09100 0.20 +1.0
Or see this region's nucleotide sequence