Experiment: Bas19
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aceE and pdhR are separated by 160 nucleotides pdhR and aroP are separated by 543 nucleotides
HEPCGN_08480: aceE - pyruvate dehydrogenase (acetyl-transferring), homodimeric type, at 436,834 to 439,497
aceE
HEPCGN_08490: pdhR - pyruvate dehydrogenase complex transcriptional repressor PdhR, at 439,658 to 440,422
pdhR
HEPCGN_08495: aroP - aromatic amino acid transporter AroP, at 440,966 to 442,336
aroP
Position (kb) 439
440
441 Strain fitness (log2 ratio) -2
-1
0
1
2 at 438.822 kb on - strand, within aceE at 438.867 kb on - strand, within aceE at 438.919 kb on + strand, within aceE at 438.966 kb on - strand, within aceE at 439.006 kb on - strand, within aceE at 439.145 kb on + strand, within aceE at 439.146 kb on - strand, within aceE at 439.510 kb on - strand at 439.510 kb on - strand at 439.518 kb on - strand at 439.659 kb on + strand at 439.686 kb on - strand at 439.826 kb on - strand, within pdhR at 440.022 kb on - strand, within pdhR at 440.069 kb on - strand, within pdhR at 440.069 kb on - strand, within pdhR at 440.086 kb on - strand, within pdhR at 440.415 kb on + strand at 440.415 kb on + strand at 440.492 kb on - strand at 440.500 kb on - strand at 440.508 kb on + strand at 440.509 kb on - strand at 440.554 kb on + strand at 440.568 kb on - strand at 440.568 kb on - strand at 440.569 kb on + strand at 440.569 kb on + strand at 440.570 kb on - strand at 440.570 kb on - strand at 440.571 kb on + strand at 440.587 kb on + strand at 440.641 kb on - strand at 440.648 kb on - strand at 440.795 kb on + strand at 440.796 kb on - strand at 440.930 kb on + strand at 440.994 kb on + strand at 440.995 kb on - strand at 440.995 kb on - strand at 441.060 kb on + strand at 441.061 kb on - strand at 441.085 kb on - strand at 441.134 kb on - strand, within aroP at 441.159 kb on + strand, within aroP at 441.160 kb on - strand, within aroP at 441.214 kb on + strand, within aroP at 441.218 kb on + strand, within aroP at 441.219 kb on - strand, within aroP at 441.270 kb on - strand, within aroP at 441.311 kb on + strand, within aroP at 441.311 kb on + strand, within aroP at 441.400 kb on - strand, within aroP at 441.400 kb on - strand, within aroP
Per-strain Table
Position Strand Gene LocusTag Fraction Bas19 remove 438,822 - aceE HEPCGN_08480 0.75 +1.2 438,867 - aceE HEPCGN_08480 0.76 -0.4 438,919 + aceE HEPCGN_08480 0.78 +2.2 438,966 - aceE HEPCGN_08480 0.80 +0.6 439,006 - aceE HEPCGN_08480 0.82 +2.2 439,145 + aceE HEPCGN_08480 0.87 +2.2 439,146 - aceE HEPCGN_08480 0.87 -0.9 439,510 - -0.6 439,510 - -1.6 439,518 - -0.7 439,659 + +1.2 439,686 - +0.8 439,826 - pdhR HEPCGN_08490 0.22 +0.3 440,022 - pdhR HEPCGN_08490 0.48 +0.0 440,069 - pdhR HEPCGN_08490 0.54 -1.3 440,069 - pdhR HEPCGN_08490 0.54 -1.5 440,086 - pdhR HEPCGN_08490 0.56 -0.7 440,415 + +0.2 440,415 + +2.2 440,492 - +0.2 440,500 - +0.2 440,508 + -0.1 440,509 - -0.1 440,554 + -1.2 440,568 - +0.1 440,568 - +0.4 440,569 + -0.3 440,569 + +0.9 440,570 - -0.6 440,570 - -1.4 440,571 + -1.2 440,587 + -0.6 440,641 - -0.5 440,648 - -0.6 440,795 + -0.0 440,796 - -0.0 440,930 + -0.4 440,994 + +1.0 440,995 - -0.2 440,995 - -0.4 441,060 + -0.4 441,061 - +0.1 441,085 - +1.4 441,134 - aroP HEPCGN_08495 0.12 +1.6 441,159 + aroP HEPCGN_08495 0.14 -0.1 441,160 - aroP HEPCGN_08495 0.14 -0.1 441,214 + aroP HEPCGN_08495 0.18 -1.9 441,218 + aroP HEPCGN_08495 0.18 +0.1 441,219 - aroP HEPCGN_08495 0.18 -0.3 441,270 - aroP HEPCGN_08495 0.22 +0.7 441,311 + aroP HEPCGN_08495 0.25 -1.5 441,311 + aroP HEPCGN_08495 0.25 +0.8 441,400 - aroP HEPCGN_08495 0.32 +1.8 441,400 - aroP HEPCGN_08495 0.32 -0.8
Or see this region's nucleotide sequence