Strain Fitness in Escherichia coli ECOR38 around HEPCGN_20040

Experiment: Bas19

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas19
2,756,633	+	nrdE	HEPCGN_20030	0.72	-1.2
2,756,669	-	nrdE	HEPCGN_20030	0.74	+0.6
2,756,869	+	nrdE	HEPCGN_20030	0.83	+0.2
2,756,890	+	nrdE	HEPCGN_20030	0.84	-0.8
2,756,890	+	nrdE	HEPCGN_20030	0.84	+1.2
2,756,891	-	nrdE	HEPCGN_20030	0.84	+0.2
2,756,891	-	nrdE	HEPCGN_20030	0.84	+0.1
2,756,892	+	nrdE	HEPCGN_20030	0.84	-0.6
2,756,892	+	nrdE	HEPCGN_20030	0.84	-1.9
2,757,013	-				-0.5
2,757,013	-				+0.4
2,757,015	+				+1.6
2,757,015	+				-0.3
2,757,016	-				+0.4
2,757,105	-				+0.6
2,757,151	-				+0.0
2,757,180	+				+0.2
2,757,342	-	nrdI	HEPCGN_20035	0.35	+1.2
2,757,464	+	nrdI	HEPCGN_20035	0.64	-0.4
2,757,485	+	nrdI	HEPCGN_20035	0.70	-0.3
2,757,485	+	nrdI	HEPCGN_20035	0.70	-0.3
2,757,485	+	nrdI	HEPCGN_20035	0.70	-0.3
2,757,485	+	nrdI	HEPCGN_20035	0.70	+0.2
2,757,486	-	nrdI	HEPCGN_20035	0.70	-1.0
2,757,486	-	nrdI	HEPCGN_20035	0.70	-0.2
2,757,570	+				+0.1
2,757,675	-	nrdH	HEPCGN_20040	0.28	-1.3
2,757,675	-	nrdH	HEPCGN_20040	0.28	+2.6
2,757,842	+				-1.1
2,757,930	-				+1.0
2,758,061	+				-0.6
2,758,120	+	yciW	HEPCGN_20045	0.14	+1.9
2,758,120	+	yciW	HEPCGN_20045	0.14	-0.2
2,758,373	+	yciW	HEPCGN_20045	0.72	+0.1
2,758,445	+	yciW	HEPCGN_20045	0.89	+0.3
2,758,445	+	yciW	HEPCGN_20045	0.89	+1.2
2,758,446	-	yciW	HEPCGN_20045	0.89	+0.5
2,758,467	-				-2.3
2,758,470	-				-1.0
2,758,480	+				+0.1
2,758,481	-				-0.0
2,758,485	+				-0.3
2,758,486	-				-0.4
2,758,507	-				-0.7
2,758,524	-				-0.8
2,758,529	+				+0.2
2,758,559	+				-0.8
2,758,578	+				-0.1
2,758,579	-				+0.0
2,758,611	-				-0.2
2,758,788	-	aRO8	HEPCGN_20050	0.16	-0.4
2,758,788	-	aRO8	HEPCGN_20050	0.16	+0.9
2,758,788	-	aRO8	HEPCGN_20050	0.16	+0.0
2,758,789	+	aRO8	HEPCGN_20050	0.16	+1.0
2,758,804	-	aRO8	HEPCGN_20050	0.17	-1.5
2,758,809	-	aRO8	HEPCGN_20050	0.17	-0.7