Strain Fitness in Escherichia coli ECOR38 around HEPCGN_19705

Experiment: Bas19

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas19
2,695,071	+	ecdD	HEPCGN_19695	0.32	-1.7
2,695,092	+	ecdD	HEPCGN_19695	0.41	-1.6
2,695,092	+	ecdD	HEPCGN_19695	0.41	-0.6
2,695,093	-	ecdD	HEPCGN_19695	0.41	+0.6
2,695,094	+	ecdD	HEPCGN_19695	0.41	-0.4
2,695,095	-	ecdD	HEPCGN_19695	0.42	-0.9
2,695,095	-	ecdD	HEPCGN_19695	0.42	-2.0
2,695,095	-	ecdD	HEPCGN_19695	0.42	-0.0
2,695,224	-				-0.4
2,695,231	-				+0.1
2,695,330	-				-0.1
2,695,370	-	pphB	HEPCGN_19700	0.15	-0.1
2,695,750	+	pphB	HEPCGN_19700	0.72	-0.6
2,695,792	+	pphB	HEPCGN_19700	0.79	-0.3
2,695,865	-				-0.8
2,695,882	+				+0.2
2,695,962	-				+0.4
2,695,964	-				+0.2
2,696,175	-				-0.7
2,696,242	+				-0.1
2,696,324	-	mutS	HEPCGN_19705	0.11	-1.2
2,696,419	+	mutS	HEPCGN_19705	0.15	+0.3
2,696,493	+	mutS	HEPCGN_19705	0.18	-0.0
2,696,493	+	mutS	HEPCGN_19705	0.18	-0.3
2,696,494	-	mutS	HEPCGN_19705	0.18	+0.1
2,696,537	-	mutS	HEPCGN_19705	0.20	+1.4
2,696,537	-	mutS	HEPCGN_19705	0.20	-0.3
2,696,537	-	mutS	HEPCGN_19705	0.20	-0.8
2,696,537	-	mutS	HEPCGN_19705	0.20	+1.0
2,696,537	-	mutS	HEPCGN_19705	0.20	+0.1
2,696,539	-	mutS	HEPCGN_19705	0.20	-1.1
2,696,555	+	mutS	HEPCGN_19705	0.20	-0.0
2,696,555	+	mutS	HEPCGN_19705	0.20	+0.3
2,696,560	+	mutS	HEPCGN_19705	0.20	+0.4
2,696,561	-	mutS	HEPCGN_19705	0.20	-1.0
2,696,682	+	mutS	HEPCGN_19705	0.25	-1.1
2,696,682	+	mutS	HEPCGN_19705	0.25	-0.7
2,696,683	-	mutS	HEPCGN_19705	0.25	-0.8
2,696,694	+	mutS	HEPCGN_19705	0.26	-1.1
2,696,694	+	mutS	HEPCGN_19705	0.26	-0.6
2,696,694	+	mutS	HEPCGN_19705	0.26	+0.7
2,696,728	+	mutS	HEPCGN_19705	0.27	+0.1
2,696,728	+	mutS	HEPCGN_19705	0.27	-0.7
2,696,729	-	mutS	HEPCGN_19705	0.27	-0.1
2,696,730	+	mutS	HEPCGN_19705	0.27	-0.7
2,696,730	+	mutS	HEPCGN_19705	0.27	-0.0
2,696,731	-	mutS	HEPCGN_19705	0.27	+1.3
2,696,731	-	mutS	HEPCGN_19705	0.27	+0.7
2,696,731	-	mutS	HEPCGN_19705	0.27	+0.1
2,696,731	-	mutS	HEPCGN_19705	0.27	-0.4
2,696,731	-	mutS	HEPCGN_19705	0.27	-0.0
2,696,734	+	mutS	HEPCGN_19705	0.27	+0.8
2,696,825	+	mutS	HEPCGN_19705	0.31	-0.8
2,696,825	+	mutS	HEPCGN_19705	0.31	+0.0
2,696,876	-	mutS	HEPCGN_19705	0.33	+0.2
2,696,881	+	mutS	HEPCGN_19705	0.33	+1.0
2,696,898	+	mutS	HEPCGN_19705	0.34	-0.2
2,696,910	+	mutS	HEPCGN_19705	0.34	-0.7
2,696,911	-	mutS	HEPCGN_19705	0.34	-0.4
2,696,911	-	mutS	HEPCGN_19705	0.34	-1.1
2,696,911	-	mutS	HEPCGN_19705	0.34	+0.2
2,697,080	+	mutS	HEPCGN_19705	0.41	-0.3
2,697,081	-	mutS	HEPCGN_19705	0.41	-1.7
2,697,081	-	mutS	HEPCGN_19705	0.41	-0.3
2,697,081	-	mutS	HEPCGN_19705	0.41	+0.1
2,697,096	+	mutS	HEPCGN_19705	0.41	+0.5
2,697,132	+	mutS	HEPCGN_19705	0.43	+0.6
2,697,132	+	mutS	HEPCGN_19705	0.43	-0.4
2,697,132	+	mutS	HEPCGN_19705	0.43	+1.8
2,697,133	-	mutS	HEPCGN_19705	0.43	+0.9
2,697,133	-	mutS	HEPCGN_19705	0.43	-1.2
2,697,178	-	mutS	HEPCGN_19705	0.45	-1.2
2,697,178	-	mutS	HEPCGN_19705	0.45	+0.9
2,697,178	-	mutS	HEPCGN_19705	0.45	-0.9
2,697,313	-	mutS	HEPCGN_19705	0.50	-0.6
2,697,452	+	mutS	HEPCGN_19705	0.55	-1.3
2,697,528	-	mutS	HEPCGN_19705	0.58	-1.7
2,697,576	-	mutS	HEPCGN_19705	0.60	-0.1
2,697,616	+	mutS	HEPCGN_19705	0.62	-0.7
2,697,616	+	mutS	HEPCGN_19705	0.62	+0.1
2,697,616	+	mutS	HEPCGN_19705	0.62	-0.6
2,697,662	-	mutS	HEPCGN_19705	0.63	-0.5
2,697,662	-	mutS	HEPCGN_19705	0.63	+2.0
2,697,662	-	mutS	HEPCGN_19705	0.63	+0.2
2,697,731	-	mutS	HEPCGN_19705	0.66	+0.3
2,697,835	+	mutS	HEPCGN_19705	0.70	+0.7
2,697,850	+	mutS	HEPCGN_19705	0.71	-0.0
2,697,870	+	mutS	HEPCGN_19705	0.72	-1.3
2,697,871	-	mutS	HEPCGN_19705	0.72	-0.6
2,698,060	-	mutS	HEPCGN_19705	0.79	-1.6
2,698,060	-	mutS	HEPCGN_19705	0.79	-0.8
2,698,060	-	mutS	HEPCGN_19705	0.79	-0.5
2,698,079	-	mutS	HEPCGN_19705	0.80	+1.0
2,698,380	+				+0.1
2,698,477	-				-0.1
2,698,477	-				-0.5
2,698,477	-				+0.9
2,698,488	+				-0.6
2,698,488	+				+0.5
2,698,488	+				-0.8
2,698,603	+				-1.2
2,698,603	+				+0.5
2,698,604	-				+0.5
2,698,624	-		HEPCGN_19710	0.13	-0.2
2,698,656	-		HEPCGN_19710	0.26	+0.5
2,698,663	+		HEPCGN_19710	0.29	-2.1
2,698,772	-		HEPCGN_19710	0.76	-0.0
2,698,827	+				+0.2
2,698,850	+				-1.3
2,698,855	+				+0.8
2,698,856	-				-0.7
2,698,873	-				-1.2
2,698,873	-				-0.4
2,698,899	-				+0.7
2,698,983	+	ygbA	HEPCGN_19715	0.29	+0.6
2,699,055	-	ygbA	HEPCGN_19715	0.50	-1.2
2,699,077	-	ygbA	HEPCGN_19715	0.56	-0.3
2,699,212	-				+1.3
2,699,314	+	mopI	HEPCGN_19720	0.11	+0.2
2,699,518	+	mopI	HEPCGN_19720	0.59	-0.4
2,699,518	+	mopI	HEPCGN_19720	0.59	+0.7
2,699,519	-	mopI	HEPCGN_19720	0.59	+0.4
2,699,579	-	mopI	HEPCGN_19720	0.73	-0.2