Strain Fitness in Escherichia coli ECOR38 around HEPCGN_16250

Experiment: Bas19

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpsQ and rplN are separated by 164 nucleotidesrplN and rplX are separated by 10 nucleotidesrplX and rplE are separated by 14 nucleotidesrplE and rpsN are separated by 14 nucleotidesrpsN and rpsH are separated by 33 nucleotidesrpsH and rplF are separated by 12 nucleotides HEPCGN_16235: rpsQ - 30S ribosomal protein S17, at 2,010,107 to 2,010,361 rpsQ HEPCGN_16240: rplN - 50S ribosomal protein L14, at 2,010,526 to 2,010,897 rplN HEPCGN_16245: rplX - 50S ribosomal protein L24, at 2,010,908 to 2,011,222 rplX HEPCGN_16250: rplE - 50S ribosomal protein L5, at 2,011,237 to 2,011,776 rplE HEPCGN_16255: rpsN - 30S ribosomal protein S14, at 2,011,791 to 2,012,096 rpsN HEPCGN_16260: rpsH - 30S ribosomal protein S8, at 2,012,130 to 2,012,522 rpsH HEPCGN_16265: rplF - 50S ribosomal protein L6, at 2,012,535 to 2,013,068 rplF Position (kb) 2011 2012Strain fitness (log2 ratio) -2 -1 0 1at 2010.367 kb on + strandat 2010.367 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas19
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2,010,367 + +1.5
2,010,367 + -1.8

Or see this region's nucleotide sequence