Strain Fitness in Escherichia coli ECOR38 around HEPCGN_12910

Experiment: Bas19

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttatD and tatC are separated by 41 nucleotidestatC and tatB are separated by 2 nucleotidestatB and tatA are separated by 3 nucleotidestatA and ubiB are separated by 78 nucleotides HEPCGN_12900: tatD - 3'-5' ssDNA/RNA exonuclease TatD, at 1,330,912 to 1,331,694 tatD HEPCGN_12905: tatC - Sec-independent protein translocase subunit TatC, at 1,331,736 to 1,332,512 tatC HEPCGN_12910: tatB - Sec-independent protein translocase protein TatB, at 1,332,515 to 1,333,030 tatB HEPCGN_12915: tatA - Sec-independent protein translocase subunit TatA, at 1,333,034 to 1,333,303 tatA HEPCGN_12920: ubiB - ubiquinone biosynthesis regulatory protein kinase UbiB, at 1,333,382 to 1,335,022 ubiB Position (kb) 1332 1333 1334Strain fitness (log2 ratio) -3 -2 -1 0 1at 1331.632 kb on + strandat 1331.632 kb on + strandat 1331.632 kb on + strandat 1331.632 kb on + strandat 1331.632 kb on + strandat 1331.633 kb on - strandat 1331.699 kb on + strandat 1331.706 kb on + strandat 1331.706 kb on + strandat 1331.738 kb on - strandat 1331.806 kb on + strandat 1331.807 kb on - strandat 1332.524 kb on - strandat 1332.777 kb on - strand, within tatBat 1333.036 kb on - strandat 1333.036 kb on - strandat 1333.049 kb on - strandat 1333.254 kb on - strand, within tatAat 1333.304 kb on - strandat 1333.304 kb on - strandat 1333.304 kb on - strandat 1333.346 kb on + strandat 1333.348 kb on + strandat 1333.349 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas19
remove
1,331,632 + -0.3
1,331,632 + -1.1
1,331,632 + -1.0
1,331,632 + -0.3
1,331,632 + -0.0
1,331,633 - +0.7
1,331,699 + -0.4
1,331,706 + -0.0
1,331,706 + +0.9
1,331,738 - +1.0
1,331,806 + -0.3
1,331,807 - -0.3
1,332,524 - -0.4
1,332,777 - tatB HEPCGN_12910 0.51 -3.1
1,333,036 - -1.9
1,333,036 - -2.4
1,333,049 - +1.0
1,333,254 - tatA HEPCGN_12915 0.81 -1.1
1,333,304 - -1.7
1,333,304 - +0.1
1,333,304 - -0.4
1,333,346 + -2.1
1,333,348 + -0.3
1,333,349 - -0.2

Or see this region's nucleotide sequence