Experiment: Bas19
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fecR and fecI overlap by 4 nucleotides fecI and ykiE are separated by 136 nucleotides ykiE and HEPCGN_09840 are separated by 302 nucleotides HEPCGN_09840 and tnp-IS1 are separated by 128 nucleotides
HEPCGN_09825: fecR - fec operon regulator FecR, at 712,045 to 712,998
fecR
HEPCGN_09830: fecI - RNA polymerase sigma factor FecI, at 712,995 to 713,516
fecI
HEPCGN_09835: ykiE - Protein YkiE, at 713,653 to 713,721
ykiE
HEPCGN_09840: HEPCGN_09840 - HTH-Tnp-IS1 domain-containing protein, at 714,024 to 714,083
_09840
HEPCGN_09845: tnp-IS1 - IS1 family transposase, at 714,212 to 714,505
tnp-IS1
Position (kb) 712
713
714 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 712.077 kb on + strand at 712.135 kb on - strand at 712.527 kb on + strand, within fecR at 712.527 kb on + strand, within fecR at 712.880 kb on + strand, within fecR at 712.881 kb on - strand, within fecR at 712.998 kb on + strand at 712.999 kb on - strand at 713.006 kb on - strand at 713.101 kb on + strand, within fecI at 713.101 kb on + strand, within fecI at 713.184 kb on + strand, within fecI at 713.184 kb on + strand, within fecI at 713.185 kb on - strand, within fecI at 713.185 kb on - strand, within fecI at 713.241 kb on - strand, within fecI at 713.241 kb on - strand, within fecI at 713.241 kb on - strand, within fecI at 713.468 kb on - strand at 713.636 kb on + strand at 713.638 kb on + strand at 713.638 kb on + strand at 713.638 kb on + strand at 713.639 kb on - strand at 713.639 kb on - strand at 713.639 kb on - strand at 713.643 kb on + strand at 713.643 kb on + strand at 713.644 kb on - strand at 713.644 kb on - strand at 713.650 kb on - strand at 713.716 kb on + strand at 713.783 kb on - strand at 713.783 kb on - strand at 713.940 kb on + strand at 713.940 kb on + strand at 713.940 kb on + strand at 713.940 kb on + strand at 714.182 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas19 remove 712,077 + +0.8 712,135 - -1.0 712,527 + fecR HEPCGN_09825 0.51 -0.2 712,527 + fecR HEPCGN_09825 0.51 +1.2 712,880 + fecR HEPCGN_09825 0.88 +0.0 712,881 - fecR HEPCGN_09825 0.88 -0.9 712,998 + +0.1 712,999 - +1.2 713,006 - +0.3 713,101 + fecI HEPCGN_09830 0.20 -0.3 713,101 + fecI HEPCGN_09830 0.20 -0.4 713,184 + fecI HEPCGN_09830 0.36 -0.7 713,184 + fecI HEPCGN_09830 0.36 -0.5 713,185 - fecI HEPCGN_09830 0.36 -0.8 713,185 - fecI HEPCGN_09830 0.36 -0.8 713,241 - fecI HEPCGN_09830 0.47 +0.8 713,241 - fecI HEPCGN_09830 0.47 +0.0 713,241 - fecI HEPCGN_09830 0.47 -0.3 713,468 - +1.2 713,636 + +0.3 713,638 + +0.7 713,638 + +0.2 713,638 + -0.5 713,639 - +0.2 713,639 - +0.2 713,639 - -0.5 713,643 + -1.7 713,643 + +2.9 713,644 - +0.9 713,644 - +0.1 713,650 - +0.7 713,716 + -0.6 713,783 - -2.6 713,783 - +0.1 713,940 + -2.0 713,940 + -1.7 713,940 + +0.1 713,940 + -0.3 714,182 + -0.3
Or see this region's nucleotide sequence