Strain Fitness in Escherichia coli ECOR38 around HEPCGN_04130

Experiment: Bas19

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfliD and HEPCGN_04130 are separated by 265 nucleotidesHEPCGN_04130 and fliA are separated by 165 nucleotidesfliA and fliZ are separated by 45 nucleotides HEPCGN_04125: fliD - flagellar filament capping protein FliD, at 722,859 to 724,265 fliD HEPCGN_04130: HEPCGN_04130 - flagellin FliC, at 724,531 to 726,237 _04130 HEPCGN_04135: fliA - RNA polymerase sigma factor FliA, at 726,403 to 727,122 fliA HEPCGN_04140: fliZ - flagella biosynthesis regulatory protein FliZ, at 727,168 to 727,719 fliZ Position (kb) 724 725 726 727Strain fitness (log2 ratio) -2 -1 0 1 2 3at 723.775 kb on - strand, within fliDat 723.982 kb on + strand, within fliDat 723.983 kb on - strand, within fliDat 723.983 kb on - strand, within fliDat 724.070 kb on + strand, within fliDat 724.221 kb on + strandat 724.256 kb on + strandat 724.340 kb on + strandat 724.341 kb on - strandat 724.498 kb on + strandat 724.545 kb on + strandat 724.548 kb on + strandat 724.581 kb on + strandat 724.642 kb on - strandat 724.642 kb on - strandat 724.644 kb on + strandat 724.698 kb on + strandat 724.699 kb on - strandat 724.839 kb on + strand, within HEPCGN_04130at 724.941 kb on - strand, within HEPCGN_04130at 724.995 kb on + strand, within HEPCGN_04130at 725.049 kb on + strand, within HEPCGN_04130at 725.070 kb on + strand, within HEPCGN_04130at 725.071 kb on - strand, within HEPCGN_04130at 725.071 kb on - strand, within HEPCGN_04130at 725.135 kb on - strand, within HEPCGN_04130at 725.154 kb on + strand, within HEPCGN_04130at 725.203 kb on - strand, within HEPCGN_04130at 725.208 kb on + strand, within HEPCGN_04130at 725.212 kb on - strand, within HEPCGN_04130at 725.212 kb on - strand, within HEPCGN_04130at 725.236 kb on + strand, within HEPCGN_04130at 725.237 kb on - strand, within HEPCGN_04130at 725.238 kb on + strand, within HEPCGN_04130at 725.238 kb on + strand, within HEPCGN_04130at 725.238 kb on + strand, within HEPCGN_04130at 725.238 kb on + strand, within HEPCGN_04130at 725.242 kb on + strand, within HEPCGN_04130at 725.243 kb on - strand, within HEPCGN_04130at 725.243 kb on - strand, within HEPCGN_04130at 725.243 kb on - strand, within HEPCGN_04130at 725.353 kb on + strand, within HEPCGN_04130at 725.355 kb on + strand, within HEPCGN_04130at 725.355 kb on + strand, within HEPCGN_04130at 725.356 kb on - strand, within HEPCGN_04130at 725.361 kb on + strand, within HEPCGN_04130at 725.395 kb on - strand, within HEPCGN_04130at 725.450 kb on + strand, within HEPCGN_04130at 725.451 kb on - strand, within HEPCGN_04130at 725.514 kb on + strand, within HEPCGN_04130at 725.514 kb on + strand, within HEPCGN_04130at 725.520 kb on - strand, within HEPCGN_04130at 725.536 kb on - strand, within HEPCGN_04130at 725.593 kb on + strand, within HEPCGN_04130at 725.594 kb on - strand, within HEPCGN_04130at 725.606 kb on + strand, within HEPCGN_04130at 725.634 kb on - strand, within HEPCGN_04130at 725.664 kb on + strand, within HEPCGN_04130at 725.679 kb on + strand, within HEPCGN_04130at 725.680 kb on - strand, within HEPCGN_04130at 725.680 kb on - strand, within HEPCGN_04130at 725.683 kb on + strand, within HEPCGN_04130at 725.684 kb on - strand, within HEPCGN_04130at 725.684 kb on - strand, within HEPCGN_04130at 725.684 kb on - strand, within HEPCGN_04130at 725.685 kb on + strand, within HEPCGN_04130at 725.685 kb on + strand, within HEPCGN_04130at 725.688 kb on + strand, within HEPCGN_04130at 725.688 kb on + strand, within HEPCGN_04130at 725.731 kb on - strand, within HEPCGN_04130at 725.745 kb on + strand, within HEPCGN_04130at 725.746 kb on - strand, within HEPCGN_04130at 725.761 kb on + strand, within HEPCGN_04130at 725.761 kb on + strand, within HEPCGN_04130at 725.762 kb on - strand, within HEPCGN_04130at 725.762 kb on - strand, within HEPCGN_04130at 725.764 kb on - strand, within HEPCGN_04130at 725.801 kb on - strand, within HEPCGN_04130at 725.813 kb on - strand, within HEPCGN_04130at 725.841 kb on - strand, within HEPCGN_04130at 725.847 kb on - strand, within HEPCGN_04130at 725.847 kb on - strand, within HEPCGN_04130at 725.886 kb on + strand, within HEPCGN_04130at 725.906 kb on - strand, within HEPCGN_04130at 725.911 kb on - strand, within HEPCGN_04130at 725.916 kb on + strand, within HEPCGN_04130at 725.922 kb on + strand, within HEPCGN_04130at 726.079 kb on - strandat 726.174 kb on + strandat 726.310 kb on + strandat 726.382 kb on + strandat 726.382 kb on + strandat 726.384 kb on + strandat 726.384 kb on + strandat 726.384 kb on + strandat 726.385 kb on - strandat 726.385 kb on - strandat 726.385 kb on - strandat 726.385 kb on - strandat 726.416 kb on - strandat 726.416 kb on - strandat 726.439 kb on - strandat 726.460 kb on + strandat 726.561 kb on + strand, within fliAat 726.562 kb on - strand, within fliAat 726.587 kb on + strand, within fliAat 726.588 kb on - strand, within fliAat 726.636 kb on + strand, within fliAat 726.911 kb on + strand, within fliAat 726.931 kb on - strand, within fliAat 727.000 kb on + strand, within fliAat 727.000 kb on + strand, within fliAat 727.001 kb on - strand, within fliAat 727.001 kb on - strand, within fliAat 727.118 kb on + strandat 727.121 kb on - strandat 727.153 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas19
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723,775 - fliD HEPCGN_04125 0.65 +0.6
723,982 + fliD HEPCGN_04125 0.80 -0.1
723,983 - fliD HEPCGN_04125 0.80 +1.1
723,983 - fliD HEPCGN_04125 0.80 +0.6
724,070 + fliD HEPCGN_04125 0.86 -0.0
724,221 + -1.9
724,256 + -1.7
724,340 + -1.0
724,341 - +0.4
724,498 + -0.3
724,545 + +0.1
724,548 + +0.2
724,581 + -1.0
724,642 - -0.2
724,642 - +1.4
724,644 + -1.1
724,698 + +0.4
724,699 - +0.2
724,839 + HEPCGN_04130 0.18 +0.8
724,941 - HEPCGN_04130 0.24 +0.3
724,995 + HEPCGN_04130 0.27 +0.5
725,049 + HEPCGN_04130 0.30 +0.3
725,070 + HEPCGN_04130 0.32 +0.2
725,071 - HEPCGN_04130 0.32 +0.9
725,071 - HEPCGN_04130 0.32 +0.6
725,135 - HEPCGN_04130 0.35 -0.4
725,154 + HEPCGN_04130 0.36 +0.0
725,203 - HEPCGN_04130 0.39 -0.4
725,208 + HEPCGN_04130 0.40 -0.2
725,212 - HEPCGN_04130 0.40 -0.8
725,212 - HEPCGN_04130 0.40 +0.0
725,236 + HEPCGN_04130 0.41 -0.5
725,237 - HEPCGN_04130 0.41 -0.1
725,238 + HEPCGN_04130 0.41 -0.5
725,238 + HEPCGN_04130 0.41 +0.2
725,238 + HEPCGN_04130 0.41 -0.0
725,238 + HEPCGN_04130 0.41 +0.0
725,242 + HEPCGN_04130 0.42 -0.3
725,243 - HEPCGN_04130 0.42 -0.4
725,243 - HEPCGN_04130 0.42 -0.7
725,243 - HEPCGN_04130 0.42 -0.4
725,353 + HEPCGN_04130 0.48 +0.3
725,355 + HEPCGN_04130 0.48 +0.7
725,355 + HEPCGN_04130 0.48 -0.2
725,356 - HEPCGN_04130 0.48 +0.4
725,361 + HEPCGN_04130 0.49 -0.7
725,395 - HEPCGN_04130 0.51 -1.6
725,450 + HEPCGN_04130 0.54 +0.3
725,451 - HEPCGN_04130 0.54 -0.4
725,514 + HEPCGN_04130 0.58 -1.3
725,514 + HEPCGN_04130 0.58 +0.5
725,520 - HEPCGN_04130 0.58 +0.9
725,536 - HEPCGN_04130 0.59 +0.3
725,593 + HEPCGN_04130 0.62 +0.1
725,594 - HEPCGN_04130 0.62 +0.6
725,606 + HEPCGN_04130 0.63 -1.9
725,634 - HEPCGN_04130 0.65 +0.1
725,664 + HEPCGN_04130 0.66 +0.3
725,679 + HEPCGN_04130 0.67 -0.1
725,680 - HEPCGN_04130 0.67 +0.1
725,680 - HEPCGN_04130 0.67 -0.4
725,683 + HEPCGN_04130 0.67 -1.9
725,684 - HEPCGN_04130 0.68 +0.1
725,684 - HEPCGN_04130 0.68 -0.2
725,684 - HEPCGN_04130 0.68 +0.1
725,685 + HEPCGN_04130 0.68 +0.2
725,685 + HEPCGN_04130 0.68 +0.4
725,688 + HEPCGN_04130 0.68 +0.8
725,688 + HEPCGN_04130 0.68 -0.2
725,731 - HEPCGN_04130 0.70 +0.7
725,745 + HEPCGN_04130 0.71 -1.6
725,746 - HEPCGN_04130 0.71 +1.4
725,761 + HEPCGN_04130 0.72 +0.4
725,761 + HEPCGN_04130 0.72 +0.6
725,762 - HEPCGN_04130 0.72 -0.1
725,762 - HEPCGN_04130 0.72 +1.0
725,764 - HEPCGN_04130 0.72 -1.6
725,801 - HEPCGN_04130 0.74 -1.7
725,813 - HEPCGN_04130 0.75 -2.1
725,841 - HEPCGN_04130 0.77 -0.2
725,847 - HEPCGN_04130 0.77 +0.3
725,847 - HEPCGN_04130 0.77 +0.9
725,886 + HEPCGN_04130 0.79 +0.8
725,906 - HEPCGN_04130 0.81 -0.9
725,911 - HEPCGN_04130 0.81 -0.4
725,916 + HEPCGN_04130 0.81 -0.5
725,922 + HEPCGN_04130 0.81 -0.1
726,079 - -2.7
726,174 + -0.8
726,310 + -0.1
726,382 + -1.2
726,382 + -0.2
726,384 + +0.1
726,384 + -0.3
726,384 + -0.3
726,385 - -0.4
726,385 - +0.4
726,385 - +0.1
726,385 - +0.1
726,416 - -0.5
726,416 - +0.2
726,439 - +3.0
726,460 + +0.1
726,561 + fliA HEPCGN_04135 0.22 +0.0
726,562 - fliA HEPCGN_04135 0.22 -0.1
726,587 + fliA HEPCGN_04135 0.26 +0.3
726,588 - fliA HEPCGN_04135 0.26 -0.8
726,636 + fliA HEPCGN_04135 0.32 +0.5
726,911 + fliA HEPCGN_04135 0.71 -0.4
726,931 - fliA HEPCGN_04135 0.73 -0.4
727,000 + fliA HEPCGN_04135 0.83 -0.3
727,000 + fliA HEPCGN_04135 0.83 +0.4
727,001 - fliA HEPCGN_04135 0.83 -0.4
727,001 - fliA HEPCGN_04135 0.83 +0.3
727,118 + +0.5
727,121 - +2.9
727,153 + -0.4

Or see this region's nucleotide sequence