Experiment: Bas19
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliE and yedL are separated by 404 nucleotides yedL and yedK are separated by 110 nucleotides yedK and yedF are separated by 108 nucleotides yedF and yedE overlap by 4 nucleotides
HEPCGN_04080: fliE - flagellar hook-basal body complex protein FliE, at 716,339 to 716,653
fliE
HEPCGN_04085: yedL - Uncharacterized N-acetyltransferase YedL, at 717,058 to 717,537
yedL
HEPCGN_04090: yedK - Abasic site processing protein YedK, at 717,648 to 718,316
yedK
HEPCGN_04095: yedF - sulfurtransferase-like selenium metabolism protein YedF, at 718,425 to 718,658
yedF
HEPCGN_04100: yedE - selenium metabolism membrane protein YedE/FdhT, at 718,655 to 719,860
yedE
Position (kb) 717
718
719 Strain fitness (log2 ratio) -1
0
1
2 at 716.672 kb on - strand at 716.725 kb on + strand at 716.778 kb on + strand at 716.843 kb on + strand at 716.843 kb on + strand at 716.844 kb on - strand at 716.898 kb on + strand at 716.898 kb on + strand at 716.905 kb on - strand at 716.933 kb on - strand at 716.933 kb on - strand at 716.949 kb on + strand at 716.984 kb on + strand at 716.985 kb on - strand at 717.199 kb on - strand, within yedL at 717.260 kb on - strand, within yedL at 717.290 kb on + strand, within yedL at 717.427 kb on + strand, within yedL at 717.427 kb on + strand, within yedL at 717.474 kb on + strand, within yedL at 717.479 kb on + strand, within yedL at 717.479 kb on + strand, within yedL at 717.819 kb on + strand, within yedK at 717.842 kb on + strand, within yedK at 717.842 kb on + strand, within yedK at 717.925 kb on - strand, within yedK at 717.936 kb on - strand, within yedK at 717.961 kb on + strand, within yedK at 717.965 kb on + strand, within yedK at 717.965 kb on + strand, within yedK at 717.970 kb on + strand, within yedK at 718.129 kb on + strand, within yedK at 718.211 kb on - strand, within yedK at 718.316 kb on + strand at 718.317 kb on - strand at 718.317 kb on - strand at 718.317 kb on - strand at 718.378 kb on - strand at 718.386 kb on - strand at 718.426 kb on + strand at 718.437 kb on + strand at 718.514 kb on + strand, within yedF at 718.515 kb on - strand, within yedF at 718.649 kb on + strand at 718.749 kb on + strand at 718.974 kb on - strand, within yedE at 718.986 kb on - strand, within yedE at 719.027 kb on + strand, within yedE at 719.033 kb on + strand, within yedE at 719.033 kb on + strand, within yedE at 719.037 kb on + strand, within yedE at 719.099 kb on - strand, within yedE
Per-strain Table
Position Strand Gene LocusTag Fraction Bas19 remove 716,672 - -1.2 716,725 + -0.6 716,778 + +1.0 716,843 + -0.1 716,843 + -0.6 716,844 - -0.6 716,898 + -0.3 716,898 + +0.5 716,905 - -0.6 716,933 - +0.3 716,933 - -0.7 716,949 + +0.6 716,984 + +0.3 716,985 - +0.4 717,199 - yedL HEPCGN_04085 0.29 -0.7 717,260 - yedL HEPCGN_04085 0.42 -0.3 717,290 + yedL HEPCGN_04085 0.48 +0.3 717,427 + yedL HEPCGN_04085 0.77 +1.0 717,427 + yedL HEPCGN_04085 0.77 -0.6 717,474 + yedL HEPCGN_04085 0.87 +0.1 717,479 + yedL HEPCGN_04085 0.88 -0.8 717,479 + yedL HEPCGN_04085 0.88 +0.1 717,819 + yedK HEPCGN_04090 0.26 -0.8 717,842 + yedK HEPCGN_04090 0.29 -1.4 717,842 + yedK HEPCGN_04090 0.29 -0.2 717,925 - yedK HEPCGN_04090 0.41 -0.9 717,936 - yedK HEPCGN_04090 0.43 -0.5 717,961 + yedK HEPCGN_04090 0.47 +1.9 717,965 + yedK HEPCGN_04090 0.47 +0.0 717,965 + yedK HEPCGN_04090 0.47 +0.6 717,970 + yedK HEPCGN_04090 0.48 -0.5 718,129 + yedK HEPCGN_04090 0.72 -0.2 718,211 - yedK HEPCGN_04090 0.84 -0.7 718,316 + -0.5 718,317 - +0.4 718,317 - +1.0 718,317 - +0.2 718,378 - -1.0 718,386 - -1.7 718,426 + -0.4 718,437 + -0.7 718,514 + yedF HEPCGN_04095 0.38 -1.1 718,515 - yedF HEPCGN_04095 0.38 +0.4 718,649 + +0.9 718,749 + +0.8 718,974 - yedE HEPCGN_04100 0.26 +0.8 718,986 - yedE HEPCGN_04100 0.27 -0.4 719,027 + yedE HEPCGN_04100 0.31 -0.4 719,033 + yedE HEPCGN_04100 0.31 +0.9 719,033 + yedE HEPCGN_04100 0.31 +1.1 719,037 + yedE HEPCGN_04100 0.32 +0.4 719,099 - yedE HEPCGN_04100 0.37 +0.1
Or see this region's nucleotide sequence