Experiment: Bas19
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt holA and lptE overlap by 1 nucleotides lptE and leuS are separated by 14 nucleotides leuS and ybeL are separated by 234 nucleotides ybeL and rihA are separated by 44 nucleotides
HEPCGN_00935: holA - DNA polymerase III subunit delta, at 114,177 to 115,208
holA
HEPCGN_00940: lptE - LPS assembly lipoprotein LptE, at 115,208 to 115,789
lptE
HEPCGN_00945: leuS - leucine--tRNA ligase, at 115,804 to 118,386
leuS
HEPCGN_00950: ybeL - zinc ribbon-containing protein, at 118,621 to 119,103
ybeL
HEPCGN_00955: rihA - pyrimidine-specific ribonucleoside hydrolase RihA, at 119,148 to 120,083
rihA
Position (kb) 115
116
117
118
119 Strain fitness (log2 ratio) -2
-1
0
1
2 at 118.533 kb on - strand at 118.583 kb on + strand at 118.587 kb on - strand at 118.587 kb on - strand at 118.590 kb on - strand at 118.590 kb on - strand at 118.642 kb on + strand at 118.642 kb on + strand at 118.642 kb on + strand at 118.816 kb on + strand, within ybeL at 118.866 kb on + strand, within ybeL at 118.867 kb on - strand, within ybeL at 118.867 kb on - strand, within ybeL at 118.906 kb on - strand, within ybeL at 119.029 kb on + strand, within ybeL at 119.150 kb on - strand at 119.155 kb on + strand at 119.179 kb on - strand at 119.214 kb on + strand at 119.214 kb on + strand at 119.232 kb on - strand at 119.246 kb on - strand, within rihA at 119.246 kb on - strand, within rihA at 119.251 kb on + strand, within rihA at 119.251 kb on + strand, within rihA at 119.277 kb on - strand, within rihA at 119.277 kb on - strand, within rihA at 119.279 kb on - strand, within rihA at 119.279 kb on - strand, within rihA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas19 remove 118,533 - +0.7 118,583 + +0.7 118,587 - +0.2 118,587 - +0.7 118,590 - +0.1 118,590 - -0.4 118,642 + +0.1 118,642 + -1.4 118,642 + +0.3 118,816 + ybeL HEPCGN_00950 0.40 +0.6 118,866 + ybeL HEPCGN_00950 0.51 +0.6 118,867 - ybeL HEPCGN_00950 0.51 +0.2 118,867 - ybeL HEPCGN_00950 0.51 -0.7 118,906 - ybeL HEPCGN_00950 0.59 +0.4 119,029 + ybeL HEPCGN_00950 0.84 -2.2 119,150 - -2.1 119,155 + +0.1 119,179 - -1.2 119,214 + +0.0 119,214 + -0.7 119,232 - -1.1 119,246 - rihA HEPCGN_00955 0.10 +0.4 119,246 - rihA HEPCGN_00955 0.10 +1.4 119,251 + rihA HEPCGN_00955 0.11 +0.3 119,251 + rihA HEPCGN_00955 0.11 -0.6 119,277 - rihA HEPCGN_00955 0.14 -0.2 119,277 - rihA HEPCGN_00955 0.14 +1.8 119,279 - rihA HEPCGN_00955 0.14 -0.6 119,279 - rihA HEPCGN_00955 0.14 +0.1
Or see this region's nucleotide sequence