Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00059

Experiment: T6 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00058 and OHPLBJKB_00059 are separated by 126 nucleotidesOHPLBJKB_00059 and OHPLBJKB_00060 are separated by 65 nucleotidesOHPLBJKB_00060 and OHPLBJKB_00061 are separated by 36 nucleotides OHPLBJKB_00058: OHPLBJKB_00058 - hypothetical protein, at 63,780 to 64,643 _00058 OHPLBJKB_00059: OHPLBJKB_00059 - Ribonuclease PH, at 64,770 to 65,486 _00059 OHPLBJKB_00060: OHPLBJKB_00060 - Orotate phosphoribosyltransferase, at 65,552 to 66,193 _00060 OHPLBJKB_00061: OHPLBJKB_00061 - Nucleoid occlusion factor SlmA, at 66,230 to 66,826 _00061 Position (kb) 64 65 66Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 63.782 kb on - strandat 63.789 kb on - strandat 63.863 kb on + strandat 63.911 kb on + strand, within OHPLBJKB_00058at 63.911 kb on + strand, within OHPLBJKB_00058at 63.912 kb on - strand, within OHPLBJKB_00058at 63.912 kb on - strand, within OHPLBJKB_00058at 63.958 kb on + strand, within OHPLBJKB_00058at 63.959 kb on - strand, within OHPLBJKB_00058at 63.959 kb on - strand, within OHPLBJKB_00058at 64.124 kb on + strand, within OHPLBJKB_00058at 64.220 kb on + strand, within OHPLBJKB_00058at 64.220 kb on + strand, within OHPLBJKB_00058at 64.220 kb on + strand, within OHPLBJKB_00058at 64.221 kb on - strand, within OHPLBJKB_00058at 64.221 kb on - strand, within OHPLBJKB_00058at 64.221 kb on - strand, within OHPLBJKB_00058at 64.427 kb on + strand, within OHPLBJKB_00058at 64.451 kb on + strand, within OHPLBJKB_00058at 64.452 kb on - strand, within OHPLBJKB_00058at 64.487 kb on + strand, within OHPLBJKB_00058at 64.488 kb on - strand, within OHPLBJKB_00058at 64.540 kb on + strand, within OHPLBJKB_00058at 64.540 kb on + strand, within OHPLBJKB_00058at 64.541 kb on - strand, within OHPLBJKB_00058at 64.632 kb on - strandat 64.643 kb on + strandat 64.643 kb on + strandat 64.643 kb on + strandat 64.657 kb on + strandat 64.660 kb on - strandat 64.660 kb on - strandat 64.681 kb on - strandat 64.683 kb on - strandat 64.728 kb on + strandat 64.728 kb on + strandat 64.730 kb on + strandat 64.787 kb on + strandat 64.823 kb on + strandat 64.823 kb on + strandat 64.824 kb on - strandat 64.824 kb on - strandat 64.827 kb on + strandat 64.827 kb on + strandat 64.827 kb on + strandat 64.828 kb on - strandat 64.828 kb on - strandat 64.828 kb on - strandat 64.828 kb on - strandat 64.828 kb on - strandat 64.828 kb on - strandat 64.829 kb on + strandat 64.829 kb on + strandat 64.830 kb on - strandat 64.830 kb on - strandat 64.886 kb on + strand, within OHPLBJKB_00059at 64.976 kb on + strand, within OHPLBJKB_00059at 64.976 kb on + strand, within OHPLBJKB_00059at 64.977 kb on - strand, within OHPLBJKB_00059at 65.013 kb on - strand, within OHPLBJKB_00059at 65.013 kb on - strand, within OHPLBJKB_00059at 65.106 kb on - strand, within OHPLBJKB_00059at 65.245 kb on + strand, within OHPLBJKB_00059at 65.245 kb on + strand, within OHPLBJKB_00059at 65.245 kb on + strand, within OHPLBJKB_00059at 65.245 kb on + strand, within OHPLBJKB_00059at 65.270 kb on - strand, within OHPLBJKB_00059at 65.335 kb on + strand, within OHPLBJKB_00059at 65.335 kb on + strand, within OHPLBJKB_00059at 65.336 kb on - strand, within OHPLBJKB_00059at 65.336 kb on - strand, within OHPLBJKB_00059at 65.336 kb on - strand, within OHPLBJKB_00059at 65.336 kb on - strand, within OHPLBJKB_00059at 65.410 kb on + strand, within OHPLBJKB_00059at 65.411 kb on - strand, within OHPLBJKB_00059at 65.525 kb on + strandat 65.533 kb on + strandat 65.533 kb on + strandat 65.534 kb on - strandat 65.534 kb on - strandat 65.604 kb on + strandat 65.648 kb on + strand, within OHPLBJKB_00060at 65.672 kb on - strand, within OHPLBJKB_00060at 65.675 kb on - strand, within OHPLBJKB_00060at 65.697 kb on + strand, within OHPLBJKB_00060at 65.765 kb on + strand, within OHPLBJKB_00060at 65.766 kb on - strand, within OHPLBJKB_00060at 65.766 kb on - strand, within OHPLBJKB_00060at 65.899 kb on - strand, within OHPLBJKB_00060at 65.899 kb on - strand, within OHPLBJKB_00060at 65.919 kb on + strand, within OHPLBJKB_00060at 65.919 kb on + strand, within OHPLBJKB_00060at 65.920 kb on - strand, within OHPLBJKB_00060at 65.920 kb on - strand, within OHPLBJKB_00060at 65.920 kb on - strand, within OHPLBJKB_00060at 65.920 kb on - strand, within OHPLBJKB_00060at 65.920 kb on - strand, within OHPLBJKB_00060at 65.920 kb on - strand, within OHPLBJKB_00060at 65.969 kb on - strand, within OHPLBJKB_00060at 65.969 kb on - strand, within OHPLBJKB_00060at 66.001 kb on - strand, within OHPLBJKB_00060at 66.071 kb on + strand, within OHPLBJKB_00060at 66.071 kb on + strand, within OHPLBJKB_00060at 66.071 kb on + strand, within OHPLBJKB_00060at 66.072 kb on - strand, within OHPLBJKB_00060at 66.091 kb on + strand, within OHPLBJKB_00060at 66.092 kb on - strand, within OHPLBJKB_00060at 66.092 kb on - strand, within OHPLBJKB_00060at 66.171 kb on - strandat 66.228 kb on + strandat 66.228 kb on + strandat 66.228 kb on + strandat 66.228 kb on + strandat 66.229 kb on - strandat 66.231 kb on + strandat 66.231 kb on + strandat 66.322 kb on + strand, within OHPLBJKB_00061at 66.323 kb on - strand, within OHPLBJKB_00061at 66.323 kb on - strand, within OHPLBJKB_00061at 66.323 kb on - strand, within OHPLBJKB_00061at 66.323 kb on - strand, within OHPLBJKB_00061at 66.323 kb on - strand, within OHPLBJKB_00061at 66.376 kb on - strand, within OHPLBJKB_00061at 66.410 kb on + strand, within OHPLBJKB_00061at 66.410 kb on + strand, within OHPLBJKB_00061at 66.410 kb on + strand, within OHPLBJKB_00061

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Per-strain Table

Position Strand Gene LocusTag Fraction T6 MOI1
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63,782 - -1.2
63,789 - -0.3
63,863 + +1.6
63,911 + OHPLBJKB_00058 0.15 -0.1
63,911 + OHPLBJKB_00058 0.15 +0.3
63,912 - OHPLBJKB_00058 0.15 +0.9
63,912 - OHPLBJKB_00058 0.15 +0.8
63,958 + OHPLBJKB_00058 0.21 -0.1
63,959 - OHPLBJKB_00058 0.21 -0.6
63,959 - OHPLBJKB_00058 0.21 -0.0
64,124 + OHPLBJKB_00058 0.40 +0.0
64,220 + OHPLBJKB_00058 0.51 -0.6
64,220 + OHPLBJKB_00058 0.51 +0.6
64,220 + OHPLBJKB_00058 0.51 -0.2
64,221 - OHPLBJKB_00058 0.51 +0.6
64,221 - OHPLBJKB_00058 0.51 -0.0
64,221 - OHPLBJKB_00058 0.51 +0.1
64,427 + OHPLBJKB_00058 0.75 -1.5
64,451 + OHPLBJKB_00058 0.78 -0.4
64,452 - OHPLBJKB_00058 0.78 -0.7
64,487 + OHPLBJKB_00058 0.82 -0.6
64,488 - OHPLBJKB_00058 0.82 -0.8
64,540 + OHPLBJKB_00058 0.88 +0.5
64,540 + OHPLBJKB_00058 0.88 +0.7
64,541 - OHPLBJKB_00058 0.88 +0.3
64,632 - +0.1
64,643 + -0.2
64,643 + -2.1
64,643 + -0.1
64,657 + +0.8
64,660 - +0.4
64,660 - -0.3
64,681 - +1.1
64,683 - +0.5
64,728 + +0.5
64,728 + +0.3
64,730 + -1.1
64,787 + -0.9
64,823 + -0.1
64,823 + -0.8
64,824 - -0.2
64,824 - -0.8
64,827 + +0.3
64,827 + -0.2
64,827 + +0.9
64,828 - -1.4
64,828 - -2.9
64,828 - +0.2
64,828 - -0.3
64,828 - -0.4
64,828 - -0.4
64,829 + -0.4
64,829 + +0.0
64,830 - -0.8
64,830 - -1.5
64,886 + OHPLBJKB_00059 0.16 -0.2
64,976 + OHPLBJKB_00059 0.29 +0.1
64,976 + OHPLBJKB_00059 0.29 -1.9
64,977 - OHPLBJKB_00059 0.29 -0.4
65,013 - OHPLBJKB_00059 0.34 -0.3
65,013 - OHPLBJKB_00059 0.34 -0.4
65,106 - OHPLBJKB_00059 0.47 -1.5
65,245 + OHPLBJKB_00059 0.66 -0.8
65,245 + OHPLBJKB_00059 0.66 -0.2
65,245 + OHPLBJKB_00059 0.66 -0.7
65,245 + OHPLBJKB_00059 0.66 -1.0
65,270 - OHPLBJKB_00059 0.70 -1.2
65,335 + OHPLBJKB_00059 0.79 -0.5
65,335 + OHPLBJKB_00059 0.79 -0.1
65,336 - OHPLBJKB_00059 0.79 -0.4
65,336 - OHPLBJKB_00059 0.79 -1.4
65,336 - OHPLBJKB_00059 0.79 +1.0
65,336 - OHPLBJKB_00059 0.79 -1.6
65,410 + OHPLBJKB_00059 0.89 -0.9
65,411 - OHPLBJKB_00059 0.89 +1.2
65,525 + +0.2
65,533 + -0.6
65,533 + +0.2
65,534 - -0.6
65,534 - -1.2
65,604 + +0.6
65,648 + OHPLBJKB_00060 0.15 -1.4
65,672 - OHPLBJKB_00060 0.19 +0.1
65,675 - OHPLBJKB_00060 0.19 -0.1
65,697 + OHPLBJKB_00060 0.23 -1.1
65,765 + OHPLBJKB_00060 0.33 -0.1
65,766 - OHPLBJKB_00060 0.33 +1.8
65,766 - OHPLBJKB_00060 0.33 +0.0
65,899 - OHPLBJKB_00060 0.54 -0.3
65,899 - OHPLBJKB_00060 0.54 -0.2
65,919 + OHPLBJKB_00060 0.57 -0.8
65,919 + OHPLBJKB_00060 0.57 -0.6
65,920 - OHPLBJKB_00060 0.57 -0.6
65,920 - OHPLBJKB_00060 0.57 +0.3
65,920 - OHPLBJKB_00060 0.57 -0.3
65,920 - OHPLBJKB_00060 0.57 +0.6
65,920 - OHPLBJKB_00060 0.57 -0.6
65,920 - OHPLBJKB_00060 0.57 +0.5
65,969 - OHPLBJKB_00060 0.65 -1.0
65,969 - OHPLBJKB_00060 0.65 +1.1
66,001 - OHPLBJKB_00060 0.70 -1.8
66,071 + OHPLBJKB_00060 0.81 -3.1
66,071 + OHPLBJKB_00060 0.81 +0.1
66,071 + OHPLBJKB_00060 0.81 -0.0
66,072 - OHPLBJKB_00060 0.81 -0.2
66,091 + OHPLBJKB_00060 0.84 +0.1
66,092 - OHPLBJKB_00060 0.84 -0.0
66,092 - OHPLBJKB_00060 0.84 -0.4
66,171 - -1.1
66,228 + -0.6
66,228 + -0.8
66,228 + +1.2
66,228 + -0.7
66,229 - +0.5
66,231 + -0.3
66,231 + +1.0
66,322 + OHPLBJKB_00061 0.15 +0.0
66,323 - OHPLBJKB_00061 0.16 +0.1
66,323 - OHPLBJKB_00061 0.16 -1.2
66,323 - OHPLBJKB_00061 0.16 -0.8
66,323 - OHPLBJKB_00061 0.16 -0.6
66,323 - OHPLBJKB_00061 0.16 -0.2
66,376 - OHPLBJKB_00061 0.24 -1.1
66,410 + OHPLBJKB_00061 0.30 -0.1
66,410 + OHPLBJKB_00061 0.30 -0.6
66,410 + OHPLBJKB_00061 0.30 -0.3

Or see this region's nucleotide sequence