Experiment: T6 MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00029 and OHPLBJKB_00030 are separated by 3 nucleotides OHPLBJKB_00030 and OHPLBJKB_00031 are separated by 74 nucleotides OHPLBJKB_00031 and OHPLBJKB_00032 overlap by 1 nucleotides
OHPLBJKB_00029: OHPLBJKB_00029 - Acetolactate synthase isozyme 1 large subunit, at 28,536 to 30,224
_00029
OHPLBJKB_00030: OHPLBJKB_00030 - Acetolactate synthase isozyme 1 small subunit, at 30,228 to 30,518
_00030
OHPLBJKB_00031: OHPLBJKB_00031 - Transcriptional regulatory protein UhpA, at 30,593 to 31,183
_00031
OHPLBJKB_00032: OHPLBJKB_00032 - Signal transduction histidine-protein kinase/phosphatase UhpB, at 31,183 to 32,685
_00032
Position (kb) 30
31
32 Strain fitness (log2 ratio) -2
-1
0
1 at 29.886 kb on - strand, within OHPLBJKB_00029 at 29.989 kb on - strand, within OHPLBJKB_00029 at 30.036 kb on - strand, within OHPLBJKB_00029 at 30.080 kb on + strand at 30.223 kb on - strand at 30.253 kb on + strand at 30.253 kb on + strand at 30.254 kb on - strand at 30.381 kb on - strand, within OHPLBJKB_00030 at 30.381 kb on - strand, within OHPLBJKB_00030 at 30.467 kb on + strand, within OHPLBJKB_00030 at 30.468 kb on - strand, within OHPLBJKB_00030 at 30.558 kb on + strand at 30.558 kb on + strand at 30.559 kb on - strand at 30.559 kb on - strand at 30.559 kb on - strand at 30.610 kb on + strand at 30.610 kb on + strand at 30.610 kb on + strand at 30.611 kb on - strand at 30.612 kb on + strand at 30.612 kb on + strand at 30.613 kb on - strand at 30.678 kb on + strand, within OHPLBJKB_00031 at 30.678 kb on + strand, within OHPLBJKB_00031 at 30.678 kb on + strand, within OHPLBJKB_00031 at 30.678 kb on + strand, within OHPLBJKB_00031 at 30.679 kb on - strand, within OHPLBJKB_00031 at 30.679 kb on - strand, within OHPLBJKB_00031 at 30.679 kb on - strand, within OHPLBJKB_00031 at 30.679 kb on - strand, within OHPLBJKB_00031 at 30.745 kb on + strand, within OHPLBJKB_00031 at 30.745 kb on + strand, within OHPLBJKB_00031 at 30.745 kb on + strand, within OHPLBJKB_00031 at 30.746 kb on - strand, within OHPLBJKB_00031 at 30.789 kb on + strand, within OHPLBJKB_00031 at 30.790 kb on - strand, within OHPLBJKB_00031 at 30.808 kb on + strand, within OHPLBJKB_00031 at 30.820 kb on + strand, within OHPLBJKB_00031 at 30.820 kb on + strand, within OHPLBJKB_00031 at 30.932 kb on - strand, within OHPLBJKB_00031 at 30.932 kb on - strand, within OHPLBJKB_00031 at 30.953 kb on + strand, within OHPLBJKB_00031 at 30.976 kb on + strand, within OHPLBJKB_00031 at 30.977 kb on - strand, within OHPLBJKB_00031 at 30.977 kb on - strand, within OHPLBJKB_00031 at 31.099 kb on - strand, within OHPLBJKB_00031 at 31.150 kb on - strand at 31.205 kb on + strand at 31.205 kb on + strand at 31.205 kb on + strand at 31.205 kb on + strand at 31.205 kb on + strand at 31.206 kb on - strand at 31.206 kb on - strand at 31.206 kb on - strand at 31.206 kb on - strand at 31.263 kb on + strand at 31.308 kb on - strand at 31.397 kb on - strand, within OHPLBJKB_00032 at 31.643 kb on + strand, within OHPLBJKB_00032 at 31.643 kb on + strand, within OHPLBJKB_00032 at 31.663 kb on + strand, within OHPLBJKB_00032 at 31.664 kb on - strand, within OHPLBJKB_00032 at 31.675 kb on - strand, within OHPLBJKB_00032 at 31.747 kb on + strand, within OHPLBJKB_00032 at 31.747 kb on + strand, within OHPLBJKB_00032 at 31.858 kb on + strand, within OHPLBJKB_00032 at 32.019 kb on + strand, within OHPLBJKB_00032 at 32.019 kb on + strand, within OHPLBJKB_00032 at 32.019 kb on + strand, within OHPLBJKB_00032 at 32.148 kb on + strand, within OHPLBJKB_00032 at 32.154 kb on + strand, within OHPLBJKB_00032
Per-strain Table
Position Strand Gene LocusTag Fraction T6 MOI1 remove 29,886 - OHPLBJKB_00029 0.80 -0.4 29,989 - OHPLBJKB_00029 0.86 -0.5 30,036 - OHPLBJKB_00029 0.89 +1.1 30,080 + +0.5 30,223 - +0.5 30,253 + +0.1 30,253 + -0.2 30,254 - -0.8 30,381 - OHPLBJKB_00030 0.53 +0.9 30,381 - OHPLBJKB_00030 0.53 +0.3 30,467 + OHPLBJKB_00030 0.82 -0.8 30,468 - OHPLBJKB_00030 0.82 -1.5 30,558 + -0.9 30,558 + +0.4 30,559 - -0.1 30,559 - -0.4 30,559 - -0.1 30,610 + -0.7 30,610 + +0.1 30,610 + +1.1 30,611 - +0.4 30,612 + -0.3 30,612 + -0.2 30,613 - -0.5 30,678 + OHPLBJKB_00031 0.14 +0.8 30,678 + OHPLBJKB_00031 0.14 -0.2 30,678 + OHPLBJKB_00031 0.14 +0.3 30,678 + OHPLBJKB_00031 0.14 -0.2 30,679 - OHPLBJKB_00031 0.15 +0.2 30,679 - OHPLBJKB_00031 0.15 -1.0 30,679 - OHPLBJKB_00031 0.15 -0.1 30,679 - OHPLBJKB_00031 0.15 +0.6 30,745 + OHPLBJKB_00031 0.26 +1.2 30,745 + OHPLBJKB_00031 0.26 +0.3 30,745 + OHPLBJKB_00031 0.26 -0.1 30,746 - OHPLBJKB_00031 0.26 +0.0 30,789 + OHPLBJKB_00031 0.33 -0.6 30,790 - OHPLBJKB_00031 0.33 +0.2 30,808 + OHPLBJKB_00031 0.36 +0.8 30,820 + OHPLBJKB_00031 0.38 +0.9 30,820 + OHPLBJKB_00031 0.38 -0.2 30,932 - OHPLBJKB_00031 0.57 -0.2 30,932 - OHPLBJKB_00031 0.57 -0.4 30,953 + OHPLBJKB_00031 0.61 -2.4 30,976 + OHPLBJKB_00031 0.65 -0.8 30,977 - OHPLBJKB_00031 0.65 +1.1 30,977 - OHPLBJKB_00031 0.65 +0.8 31,099 - OHPLBJKB_00031 0.86 -0.3 31,150 - -1.1 31,205 + -0.4 31,205 + -0.7 31,205 + -0.4 31,205 + -0.3 31,205 + +1.5 31,206 - +0.9 31,206 - -0.5 31,206 - +1.4 31,206 - -0.1 31,263 + -0.5 31,308 - +0.3 31,397 - OHPLBJKB_00032 0.14 -1.6 31,643 + OHPLBJKB_00032 0.31 +0.3 31,643 + OHPLBJKB_00032 0.31 +0.7 31,663 + OHPLBJKB_00032 0.32 +0.8 31,664 - OHPLBJKB_00032 0.32 +0.0 31,675 - OHPLBJKB_00032 0.33 +0.0 31,747 + OHPLBJKB_00032 0.38 +0.2 31,747 + OHPLBJKB_00032 0.38 +0.1 31,858 + OHPLBJKB_00032 0.45 -0.4 32,019 + OHPLBJKB_00032 0.56 +0.3 32,019 + OHPLBJKB_00032 0.56 +0.1 32,019 + OHPLBJKB_00032 0.56 -0.2 32,148 + OHPLBJKB_00032 0.64 -0.2 32,154 + OHPLBJKB_00032 0.65 -0.4
Or see this region's nucleotide sequence