Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS00950

Experiment: Mucin from porcine stomach,Type II (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS00940 and ABI39_RS00950 are separated by 366 nucleotidesABI39_RS00950 and ABI39_RS00955 are separated by 31 nucleotides ABI39_RS00940: ABI39_RS00940 - phage integrase SAM-like domain-containing protein, at 300,961 to 302,133 _RS00940 ABI39_RS00950: ABI39_RS00950 - TonB-dependent receptor, at 302,500 to 305,652 _RS00950 ABI39_RS00955: ABI39_RS00955 - RagB/SusD family nutrient uptake outer membrane protein, at 305,684 to 307,822 _RS00955 Position (kb) 302 303 304 305 306Strain fitness (log2 ratio) -1 0 1at 301.520 kb on + strand, within ABI39_RS00940at 301.567 kb on - strand, within ABI39_RS00940at 301.611 kb on - strand, within ABI39_RS00940at 301.660 kb on + strand, within ABI39_RS00940at 301.738 kb on + strand, within ABI39_RS00940at 301.740 kb on + strand, within ABI39_RS00940at 301.740 kb on + strand, within ABI39_RS00940at 301.818 kb on + strand, within ABI39_RS00940at 301.829 kb on - strand, within ABI39_RS00940at 301.873 kb on + strand, within ABI39_RS00940at 301.887 kb on + strand, within ABI39_RS00940at 301.934 kb on + strand, within ABI39_RS00940at 301.939 kb on - strand, within ABI39_RS00940at 301.994 kb on + strand, within ABI39_RS00940at 301.994 kb on + strand, within ABI39_RS00940at 301.994 kb on + strand, within ABI39_RS00940at 301.995 kb on - strand, within ABI39_RS00940at 302.020 kb on + strandat 302.035 kb on - strandat 302.056 kb on - strandat 302.056 kb on - strandat 302.065 kb on + strandat 302.067 kb on + strandat 302.144 kb on + strandat 302.147 kb on + strandat 302.147 kb on + strandat 302.148 kb on - strandat 302.149 kb on + strandat 302.149 kb on + strandat 302.152 kb on - strandat 302.157 kb on + strandat 302.158 kb on - strandat 302.158 kb on - strandat 302.178 kb on + strandat 302.196 kb on + strandat 302.202 kb on - strandat 302.213 kb on - strandat 302.230 kb on + strandat 302.236 kb on + strandat 302.241 kb on - strandat 302.448 kb on - strandat 302.448 kb on - strandat 302.932 kb on - strand, within ABI39_RS00950at 302.985 kb on - strand, within ABI39_RS00950at 302.988 kb on + strand, within ABI39_RS00950at 302.989 kb on - strand, within ABI39_RS00950at 303.073 kb on + strand, within ABI39_RS00950at 303.074 kb on - strand, within ABI39_RS00950at 303.077 kb on + strand, within ABI39_RS00950at 303.078 kb on - strand, within ABI39_RS00950at 303.207 kb on - strand, within ABI39_RS00950at 303.207 kb on - strand, within ABI39_RS00950at 303.318 kb on + strand, within ABI39_RS00950at 303.319 kb on - strand, within ABI39_RS00950at 303.319 kb on - strand, within ABI39_RS00950at 303.322 kb on - strand, within ABI39_RS00950at 303.341 kb on - strand, within ABI39_RS00950at 303.384 kb on + strand, within ABI39_RS00950at 303.384 kb on + strand, within ABI39_RS00950at 303.384 kb on + strand, within ABI39_RS00950at 303.385 kb on - strand, within ABI39_RS00950at 303.446 kb on + strand, within ABI39_RS00950at 303.447 kb on - strand, within ABI39_RS00950at 303.447 kb on - strand, within ABI39_RS00950at 303.512 kb on + strand, within ABI39_RS00950at 303.730 kb on + strand, within ABI39_RS00950at 303.730 kb on + strand, within ABI39_RS00950at 303.779 kb on + strand, within ABI39_RS00950at 303.779 kb on + strand, within ABI39_RS00950at 303.779 kb on + strand, within ABI39_RS00950at 303.780 kb on - strand, within ABI39_RS00950at 303.876 kb on + strand, within ABI39_RS00950at 303.897 kb on + strand, within ABI39_RS00950at 303.968 kb on + strand, within ABI39_RS00950at 304.027 kb on + strand, within ABI39_RS00950at 304.089 kb on + strand, within ABI39_RS00950at 304.089 kb on + strand, within ABI39_RS00950at 304.089 kb on + strand, within ABI39_RS00950at 304.090 kb on - strand, within ABI39_RS00950at 304.093 kb on + strand, within ABI39_RS00950at 304.108 kb on + strand, within ABI39_RS00950at 304.143 kb on + strand, within ABI39_RS00950at 304.182 kb on - strand, within ABI39_RS00950at 304.182 kb on - strand, within ABI39_RS00950at 304.203 kb on + strand, within ABI39_RS00950at 304.285 kb on - strand, within ABI39_RS00950at 304.301 kb on - strand, within ABI39_RS00950at 304.323 kb on + strand, within ABI39_RS00950at 304.323 kb on + strand, within ABI39_RS00950at 304.576 kb on + strand, within ABI39_RS00950at 304.587 kb on - strand, within ABI39_RS00950at 304.607 kb on - strand, within ABI39_RS00950at 304.607 kb on - strand, within ABI39_RS00950at 304.661 kb on - strand, within ABI39_RS00950at 304.723 kb on - strand, within ABI39_RS00950at 304.726 kb on + strand, within ABI39_RS00950at 304.726 kb on + strand, within ABI39_RS00950at 304.733 kb on + strand, within ABI39_RS00950at 304.734 kb on - strand, within ABI39_RS00950at 304.803 kb on - strand, within ABI39_RS00950at 304.819 kb on - strand, within ABI39_RS00950at 304.859 kb on + strand, within ABI39_RS00950at 304.860 kb on - strand, within ABI39_RS00950at 304.864 kb on - strand, within ABI39_RS00950at 304.917 kb on + strand, within ABI39_RS00950at 304.942 kb on - strand, within ABI39_RS00950at 305.164 kb on + strand, within ABI39_RS00950at 305.188 kb on - strand, within ABI39_RS00950at 305.191 kb on - strand, within ABI39_RS00950at 305.246 kb on - strand, within ABI39_RS00950at 305.261 kb on + strand, within ABI39_RS00950at 305.293 kb on - strand, within ABI39_RS00950at 305.329 kb on + strand, within ABI39_RS00950at 305.329 kb on + strand, within ABI39_RS00950at 305.330 kb on - strand, within ABI39_RS00950at 305.330 kb on - strand, within ABI39_RS00950at 305.330 kb on - strand, within ABI39_RS00950at 305.419 kb on + strandat 305.485 kb on - strandat 305.537 kb on - strandat 305.554 kb on - strandat 305.566 kb on + strandat 305.608 kb on + strandat 305.611 kb on + strandat 305.617 kb on - strandat 305.701 kb on + strandat 305.893 kb on + strandat 305.893 kb on + strandat 305.921 kb on - strand, within ABI39_RS00955at 306.143 kb on + strand, within ABI39_RS00955at 306.164 kb on + strand, within ABI39_RS00955at 306.165 kb on - strand, within ABI39_RS00955at 306.334 kb on + strand, within ABI39_RS00955at 306.460 kb on - strand, within ABI39_RS00955at 306.460 kb on - strand, within ABI39_RS00955at 306.489 kb on + strand, within ABI39_RS00955at 306.503 kb on - strand, within ABI39_RS00955at 306.617 kb on + strand, within ABI39_RS00955at 306.620 kb on - strand, within ABI39_RS00955at 306.620 kb on - strand, within ABI39_RS00955

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Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach,Type II (C)
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301,520 + ABI39_RS00940 0.48 -0.1
301,567 - ABI39_RS00940 0.52 +0.3
301,611 - ABI39_RS00940 0.55 -0.6
301,660 + ABI39_RS00940 0.60 -0.4
301,738 + ABI39_RS00940 0.66 -0.2
301,740 + ABI39_RS00940 0.66 +1.1
301,740 + ABI39_RS00940 0.66 +0.1
301,818 + ABI39_RS00940 0.73 -0.3
301,829 - ABI39_RS00940 0.74 -0.0
301,873 + ABI39_RS00940 0.78 +0.4
301,887 + ABI39_RS00940 0.79 +0.4
301,934 + ABI39_RS00940 0.83 +0.0
301,939 - ABI39_RS00940 0.83 -1.0
301,994 + ABI39_RS00940 0.88 -0.2
301,994 + ABI39_RS00940 0.88 -0.1
301,994 + ABI39_RS00940 0.88 +0.1
301,995 - ABI39_RS00940 0.88 -0.0
302,020 + +0.8
302,035 - -0.4
302,056 - +0.2
302,056 - -0.2
302,065 + -0.8
302,067 + +0.0
302,144 + -0.6
302,147 + -0.1
302,147 + -0.5
302,148 - +0.2
302,149 + +1.1
302,149 + -0.3
302,152 - +0.3
302,157 + -0.1
302,158 - -0.3
302,158 - -0.0
302,178 + -0.2
302,196 + +0.1
302,202 - +0.5
302,213 - -0.0
302,230 + -0.7
302,236 + +0.2
302,241 - -0.9
302,448 - -0.0
302,448 - +0.4
302,932 - ABI39_RS00950 0.14 -0.3
302,985 - ABI39_RS00950 0.15 +0.0
302,988 + ABI39_RS00950 0.15 -0.1
302,989 - ABI39_RS00950 0.16 -0.8
303,073 + ABI39_RS00950 0.18 -0.1
303,074 - ABI39_RS00950 0.18 +0.0
303,077 + ABI39_RS00950 0.18 -0.4
303,078 - ABI39_RS00950 0.18 +0.6
303,207 - ABI39_RS00950 0.22 +0.2
303,207 - ABI39_RS00950 0.22 -0.4
303,318 + ABI39_RS00950 0.26 +0.0
303,319 - ABI39_RS00950 0.26 +0.4
303,319 - ABI39_RS00950 0.26 +0.2
303,322 - ABI39_RS00950 0.26 +0.1
303,341 - ABI39_RS00950 0.27 -0.3
303,384 + ABI39_RS00950 0.28 -0.5
303,384 + ABI39_RS00950 0.28 +0.4
303,384 + ABI39_RS00950 0.28 +0.1
303,385 - ABI39_RS00950 0.28 -0.1
303,446 + ABI39_RS00950 0.30 -0.2
303,447 - ABI39_RS00950 0.30 -0.4
303,447 - ABI39_RS00950 0.30 -0.3
303,512 + ABI39_RS00950 0.32 -0.2
303,730 + ABI39_RS00950 0.39 -0.5
303,730 + ABI39_RS00950 0.39 -1.7
303,779 + ABI39_RS00950 0.41 -0.6
303,779 + ABI39_RS00950 0.41 +0.2
303,779 + ABI39_RS00950 0.41 +0.2
303,780 - ABI39_RS00950 0.41 +0.3
303,876 + ABI39_RS00950 0.44 -0.7
303,897 + ABI39_RS00950 0.44 +0.2
303,968 + ABI39_RS00950 0.47 +0.1
304,027 + ABI39_RS00950 0.48 -0.3
304,089 + ABI39_RS00950 0.50 -1.5
304,089 + ABI39_RS00950 0.50 -1.0
304,089 + ABI39_RS00950 0.50 +0.2
304,090 - ABI39_RS00950 0.50 +0.1
304,093 + ABI39_RS00950 0.51 -0.1
304,108 + ABI39_RS00950 0.51 +0.5
304,143 + ABI39_RS00950 0.52 +0.3
304,182 - ABI39_RS00950 0.53 -0.4
304,182 - ABI39_RS00950 0.53 +0.1
304,203 + ABI39_RS00950 0.54 -0.4
304,285 - ABI39_RS00950 0.57 +1.1
304,301 - ABI39_RS00950 0.57 +0.3
304,323 + ABI39_RS00950 0.58 +0.2
304,323 + ABI39_RS00950 0.58 -0.2
304,576 + ABI39_RS00950 0.66 -0.5
304,587 - ABI39_RS00950 0.66 -0.7
304,607 - ABI39_RS00950 0.67 -0.3
304,607 - ABI39_RS00950 0.67 -0.3
304,661 - ABI39_RS00950 0.69 -1.1
304,723 - ABI39_RS00950 0.71 +0.2
304,726 + ABI39_RS00950 0.71 +0.8
304,726 + ABI39_RS00950 0.71 +0.0
304,733 + ABI39_RS00950 0.71 +0.2
304,734 - ABI39_RS00950 0.71 +0.5
304,803 - ABI39_RS00950 0.73 -0.0
304,819 - ABI39_RS00950 0.74 +0.0
304,859 + ABI39_RS00950 0.75 -0.2
304,860 - ABI39_RS00950 0.75 +0.0
304,864 - ABI39_RS00950 0.75 +0.1
304,917 + ABI39_RS00950 0.77 -1.1
304,942 - ABI39_RS00950 0.77 +0.4
305,164 + ABI39_RS00950 0.84 +0.2
305,188 - ABI39_RS00950 0.85 +0.4
305,191 - ABI39_RS00950 0.85 -0.3
305,246 - ABI39_RS00950 0.87 +0.7
305,261 + ABI39_RS00950 0.88 -0.3
305,293 - ABI39_RS00950 0.89 -0.2
305,329 + ABI39_RS00950 0.90 +0.1
305,329 + ABI39_RS00950 0.90 -0.6
305,330 - ABI39_RS00950 0.90 -0.1
305,330 - ABI39_RS00950 0.90 -0.1
305,330 - ABI39_RS00950 0.90 -0.3
305,419 + -0.2
305,485 - -0.0
305,537 - +0.1
305,554 - -0.9
305,566 + -0.5
305,608 + +0.2
305,611 + -0.3
305,617 - +0.2
305,701 + -0.8
305,893 + -0.5
305,893 + -0.4
305,921 - ABI39_RS00955 0.11 -1.1
306,143 + ABI39_RS00955 0.21 -0.3
306,164 + ABI39_RS00955 0.22 -0.5
306,165 - ABI39_RS00955 0.22 +0.4
306,334 + ABI39_RS00955 0.30 +0.1
306,460 - ABI39_RS00955 0.36 +0.2
306,460 - ABI39_RS00955 0.36 +0.4
306,489 + ABI39_RS00955 0.38 +0.0
306,503 - ABI39_RS00955 0.38 +0.4
306,617 + ABI39_RS00955 0.44 -0.1
306,620 - ABI39_RS00955 0.44 +0.0
306,620 - ABI39_RS00955 0.44 +0.5

Or see this region's nucleotide sequence