Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02308

Experiment: T6 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02307 and OHPLBJKB_02308 are separated by 63 nucleotidesOHPLBJKB_02308 and OHPLBJKB_02309 are separated by 207 nucleotides OHPLBJKB_02307: OHPLBJKB_02307 - hypothetical protein, at 2,404,766 to 2,407,072 _02307 OHPLBJKB_02308: OHPLBJKB_02308 - Pyridoxine 4-dehydrogenase, at 2,407,136 to 2,407,996 _02308 OHPLBJKB_02309: OHPLBJKB_02309 - hypothetical protein, at 2,408,204 to 2,414,059 _02309 Position (kb) 2407 2408Strain fitness (log2 ratio) -2 -1 0 1 2at 2406.151 kb on + strand, within OHPLBJKB_02307at 2406.151 kb on + strand, within OHPLBJKB_02307at 2406.151 kb on + strand, within OHPLBJKB_02307at 2406.152 kb on - strand, within OHPLBJKB_02307at 2406.152 kb on - strand, within OHPLBJKB_02307at 2406.152 kb on - strand, within OHPLBJKB_02307at 2406.152 kb on - strand, within OHPLBJKB_02307at 2406.152 kb on - strand, within OHPLBJKB_02307at 2406.196 kb on + strand, within OHPLBJKB_02307at 2406.196 kb on + strand, within OHPLBJKB_02307at 2406.275 kb on - strand, within OHPLBJKB_02307at 2406.449 kb on + strand, within OHPLBJKB_02307at 2406.579 kb on - strand, within OHPLBJKB_02307at 2406.826 kb on + strand, within OHPLBJKB_02307at 2406.914 kb on - strandat 2406.970 kb on + strandat 2406.979 kb on + strandat 2406.979 kb on + strandat 2407.025 kb on - strandat 2407.037 kb on + strandat 2407.038 kb on - strandat 2407.038 kb on - strandat 2407.073 kb on - strandat 2407.129 kb on - strandat 2407.129 kb on - strandat 2407.268 kb on + strand, within OHPLBJKB_02308at 2407.269 kb on - strand, within OHPLBJKB_02308at 2407.352 kb on - strand, within OHPLBJKB_02308at 2407.380 kb on + strand, within OHPLBJKB_02308at 2407.380 kb on + strand, within OHPLBJKB_02308at 2407.381 kb on - strand, within OHPLBJKB_02308at 2407.381 kb on - strand, within OHPLBJKB_02308at 2407.381 kb on - strand, within OHPLBJKB_02308at 2407.522 kb on + strand, within OHPLBJKB_02308at 2407.523 kb on - strand, within OHPLBJKB_02308at 2407.523 kb on - strand, within OHPLBJKB_02308at 2407.615 kb on + strand, within OHPLBJKB_02308at 2407.657 kb on + strand, within OHPLBJKB_02308at 2407.658 kb on - strand, within OHPLBJKB_02308at 2407.661 kb on + strand, within OHPLBJKB_02308at 2407.661 kb on + strand, within OHPLBJKB_02308at 2407.662 kb on - strand, within OHPLBJKB_02308at 2407.662 kb on - strand, within OHPLBJKB_02308at 2407.841 kb on - strand, within OHPLBJKB_02308at 2407.880 kb on + strand, within OHPLBJKB_02308at 2407.881 kb on - strand, within OHPLBJKB_02308at 2407.979 kb on - strandat 2407.984 kb on + strandat 2407.984 kb on + strandat 2407.985 kb on - strandat 2407.985 kb on - strandat 2407.985 kb on - strandat 2407.985 kb on - strandat 2408.039 kb on + strandat 2408.039 kb on + strandat 2408.040 kb on - strandat 2408.059 kb on + strandat 2408.060 kb on - strandat 2408.072 kb on + strandat 2408.073 kb on - strandat 2408.073 kb on - strandat 2408.082 kb on + strandat 2408.099 kb on + strandat 2408.099 kb on + strandat 2408.099 kb on + strandat 2408.100 kb on - strandat 2408.100 kb on - strandat 2408.135 kb on + strandat 2408.135 kb on + strandat 2408.136 kb on - strandat 2408.268 kb on + strandat 2408.268 kb on + strandat 2408.268 kb on + strandat 2408.269 kb on - strandat 2408.304 kb on + strandat 2408.304 kb on + strandat 2408.305 kb on - strandat 2408.305 kb on - strandat 2408.330 kb on - strandat 2408.378 kb on - strandat 2408.478 kb on + strandat 2408.598 kb on - strandat 2408.598 kb on - strandat 2408.673 kb on + strandat 2408.673 kb on + strandat 2408.674 kb on - strandat 2408.758 kb on - strandat 2408.828 kb on - strand, within OHPLBJKB_02309at 2408.830 kb on - strand, within OHPLBJKB_02309at 2408.849 kb on - strand, within OHPLBJKB_02309at 2408.896 kb on - strand, within OHPLBJKB_02309at 2408.938 kb on + strand, within OHPLBJKB_02309at 2408.968 kb on + strand, within OHPLBJKB_02309at 2408.969 kb on - strand, within OHPLBJKB_02309at 2408.969 kb on - strand, within OHPLBJKB_02309at 2408.969 kb on - strand, within OHPLBJKB_02309at 2408.969 kb on - strand, within OHPLBJKB_02309at 2408.971 kb on + strand, within OHPLBJKB_02309at 2408.971 kb on + strand, within OHPLBJKB_02309at 2408.972 kb on - strand, within OHPLBJKB_02309at 2408.975 kb on + strand, within OHPLBJKB_02309

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Per-strain Table

Position Strand Gene LocusTag Fraction T6 MOI10
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2,406,151 + OHPLBJKB_02307 0.60 +0.7
2,406,151 + OHPLBJKB_02307 0.60 -0.5
2,406,151 + OHPLBJKB_02307 0.60 -0.3
2,406,152 - OHPLBJKB_02307 0.60 +0.4
2,406,152 - OHPLBJKB_02307 0.60 -0.5
2,406,152 - OHPLBJKB_02307 0.60 -1.0
2,406,152 - OHPLBJKB_02307 0.60 -0.2
2,406,152 - OHPLBJKB_02307 0.60 +0.8
2,406,196 + OHPLBJKB_02307 0.62 +0.8
2,406,196 + OHPLBJKB_02307 0.62 +0.1
2,406,275 - OHPLBJKB_02307 0.65 +0.7
2,406,449 + OHPLBJKB_02307 0.73 -1.2
2,406,579 - OHPLBJKB_02307 0.79 -1.7
2,406,826 + OHPLBJKB_02307 0.89 -0.0
2,406,914 - -0.0
2,406,970 + +0.3
2,406,979 + +1.1
2,406,979 + -0.5
2,407,025 - -0.7
2,407,037 + -0.9
2,407,038 - -2.4
2,407,038 - +1.5
2,407,073 - -0.0
2,407,129 - +0.2
2,407,129 - -1.1
2,407,268 + OHPLBJKB_02308 0.15 -0.3
2,407,269 - OHPLBJKB_02308 0.15 -1.7
2,407,352 - OHPLBJKB_02308 0.25 -1.0
2,407,380 + OHPLBJKB_02308 0.28 +0.8
2,407,380 + OHPLBJKB_02308 0.28 +0.2
2,407,381 - OHPLBJKB_02308 0.28 -0.2
2,407,381 - OHPLBJKB_02308 0.28 +0.9
2,407,381 - OHPLBJKB_02308 0.28 -0.6
2,407,522 + OHPLBJKB_02308 0.45 -0.9
2,407,523 - OHPLBJKB_02308 0.45 -0.8
2,407,523 - OHPLBJKB_02308 0.45 +0.1
2,407,615 + OHPLBJKB_02308 0.56 -0.8
2,407,657 + OHPLBJKB_02308 0.61 -0.5
2,407,658 - OHPLBJKB_02308 0.61 +0.2
2,407,661 + OHPLBJKB_02308 0.61 +0.1
2,407,661 + OHPLBJKB_02308 0.61 -0.9
2,407,662 - OHPLBJKB_02308 0.61 -0.8
2,407,662 - OHPLBJKB_02308 0.61 +0.7
2,407,841 - OHPLBJKB_02308 0.82 -0.6
2,407,880 + OHPLBJKB_02308 0.86 +0.8
2,407,881 - OHPLBJKB_02308 0.87 -0.5
2,407,979 - +0.4
2,407,984 + +0.4
2,407,984 + -1.1
2,407,985 - +1.4
2,407,985 - +0.4
2,407,985 - -0.1
2,407,985 - -0.0
2,408,039 + +0.1
2,408,039 + +0.3
2,408,040 - +0.4
2,408,059 + +0.4
2,408,060 - +0.4
2,408,072 + -0.3
2,408,073 - -0.0
2,408,073 - +0.2
2,408,082 + +0.0
2,408,099 + -0.2
2,408,099 + -0.2
2,408,099 + -0.4
2,408,100 - -0.0
2,408,100 - -1.0
2,408,135 + +0.9
2,408,135 + -1.0
2,408,136 - -2.7
2,408,268 + +0.8
2,408,268 + +0.0
2,408,268 + +2.1
2,408,269 - -1.4
2,408,304 + -0.7
2,408,304 + +0.8
2,408,305 - -0.5
2,408,305 - -0.7
2,408,330 - -1.2
2,408,378 - +1.8
2,408,478 + +1.6
2,408,598 - +1.1
2,408,598 - +0.6
2,408,673 + +0.2
2,408,673 + -0.4
2,408,674 - +0.8
2,408,758 - -0.3
2,408,828 - OHPLBJKB_02309 0.11 +0.0
2,408,830 - OHPLBJKB_02309 0.11 -0.2
2,408,849 - OHPLBJKB_02309 0.11 -0.6
2,408,896 - OHPLBJKB_02309 0.12 -0.2
2,408,938 + OHPLBJKB_02309 0.13 +0.4
2,408,968 + OHPLBJKB_02309 0.13 -0.5
2,408,969 - OHPLBJKB_02309 0.13 +0.3
2,408,969 - OHPLBJKB_02309 0.13 -0.2
2,408,969 - OHPLBJKB_02309 0.13 +0.5
2,408,969 - OHPLBJKB_02309 0.13 +0.0
2,408,971 + OHPLBJKB_02309 0.13 +0.6
2,408,971 + OHPLBJKB_02309 0.13 +0.2
2,408,972 - OHPLBJKB_02309 0.13 -0.4
2,408,975 + OHPLBJKB_02309 0.13 -1.2

Or see this region's nucleotide sequence