Experiment: polygalacturonic (ultrapure) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS21340 and ABI39_RS21345 are separated by 310 nucleotides ABI39_RS21345 and ABI39_RS21350 are separated by 202 nucleotides ABI39_RS21350 and ABI39_RS21355 are separated by 115 nucleotides ABI39_RS21355 and ABI39_RS21360 are separated by 89 nucleotides
ABI39_RS21340: ABI39_RS21340 - TonB-dependent receptor, at 5,263,384 to 5,266,659
_RS21340
ABI39_RS21345: ABI39_RS21345 - tRNA-Arg, at 5,266,970 to 5,267,041
_RS21345
ABI39_RS21350: ABI39_RS21350 - aspartate--ammonia ligase, at 5,267,244 to 5,268,284
_RS21350
ABI39_RS21355: ABI39_RS21355 - uracil-DNA glycosylase, at 5,268,400 to 5,269,062
_RS21355
ABI39_RS21360: ABI39_RS21360 - LPS-assembly protein LptD, at 5,269,152 to 5,271,887
_RS21360
Position (kb) 5267
5268
5269 Strain fitness (log2 ratio) -1
0
1 at 5266.446 kb on - strand at 5266.486 kb on - strand at 5266.528 kb on + strand at 5266.634 kb on - strand at 5266.919 kb on + strand at 5267.106 kb on + strand at 5267.526 kb on + strand, within ABI39_RS21350 at 5267.594 kb on + strand, within ABI39_RS21350 at 5267.614 kb on + strand, within ABI39_RS21350 at 5267.695 kb on - strand, within ABI39_RS21350 at 5267.718 kb on + strand, within ABI39_RS21350 at 5267.841 kb on - strand, within ABI39_RS21350 at 5267.872 kb on + strand, within ABI39_RS21350 at 5268.149 kb on + strand, within ABI39_RS21350 at 5268.229 kb on + strand at 5268.383 kb on + strand at 5268.408 kb on - strand at 5268.485 kb on + strand, within ABI39_RS21355 at 5268.510 kb on + strand, within ABI39_RS21355 at 5268.531 kb on + strand, within ABI39_RS21355 at 5268.531 kb on + strand, within ABI39_RS21355 at 5268.533 kb on + strand, within ABI39_RS21355 at 5268.874 kb on - strand, within ABI39_RS21355 at 5268.899 kb on - strand, within ABI39_RS21355 at 5268.924 kb on - strand, within ABI39_RS21355 at 5269.024 kb on + strand at 5269.066 kb on + strand at 5269.066 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (ultrapure) (C) remove 5,266,446 - -0.1 5,266,486 - +0.6 5,266,528 + -0.6 5,266,634 - -0.8 5,266,919 + -0.5 5,267,106 + -1.4 5,267,526 + ABI39_RS21350 0.27 -0.5 5,267,594 + ABI39_RS21350 0.34 -0.1 5,267,614 + ABI39_RS21350 0.36 -0.3 5,267,695 - ABI39_RS21350 0.43 -0.7 5,267,718 + ABI39_RS21350 0.46 -0.5 5,267,841 - ABI39_RS21350 0.57 +0.7 5,267,872 + ABI39_RS21350 0.60 +0.3 5,268,149 + ABI39_RS21350 0.87 -0.1 5,268,229 + +1.3 5,268,383 + -0.2 5,268,408 - +0.7 5,268,485 + ABI39_RS21355 0.13 +0.4 5,268,510 + ABI39_RS21355 0.17 +0.0 5,268,531 + ABI39_RS21355 0.20 -0.4 5,268,531 + ABI39_RS21355 0.20 +0.5 5,268,533 + ABI39_RS21355 0.20 -0.5 5,268,874 - ABI39_RS21355 0.71 -0.1 5,268,899 - ABI39_RS21355 0.75 -0.6 5,268,924 - ABI39_RS21355 0.79 -0.3 5,269,024 + -0.1 5,269,066 + -0.0 5,269,066 + +0.3
Or see this region's nucleotide sequence