Experiment: polygalacturonic (ultrapure) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS21050 and ABI39_RS21055 are separated by 12 nucleotides ABI39_RS21055 and ABI39_RS21060 are separated by 21 nucleotides ABI39_RS21060 and ABI39_RS21065 are separated by 38 nucleotides ABI39_RS21065 and ABI39_RS21070 are separated by 12 nucleotides
ABI39_RS21050: ABI39_RS21050 - anthranilate synthase component I family protein, at 5,183,147 to 5,184,547
_RS21050
ABI39_RS21055: ABI39_RS21055 - aminodeoxychorismate/anthranilate synthase component II, at 5,184,560 to 5,185,150
_RS21055
ABI39_RS21060: ABI39_RS21060 - anthranilate phosphoribosyltransferase, at 5,185,172 to 5,186,167
_RS21060
ABI39_RS21065: ABI39_RS21065 - indole-3-glycerol phosphate synthase TrpC, at 5,186,206 to 5,186,994
_RS21065
ABI39_RS21070: ABI39_RS21070 - phosphoribosylanthranilate isomerase, at 5,187,007 to 5,187,624
_RS21070
Position (kb) 5185
5186
5187 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 5184.174 kb on - strand, within ABI39_RS21050 at 5184.391 kb on + strand, within ABI39_RS21050 at 5184.584 kb on + strand at 5184.585 kb on - strand at 5184.761 kb on + strand, within ABI39_RS21055 at 5184.981 kb on + strand, within ABI39_RS21055 at 5185.164 kb on + strand at 5185.167 kb on + strand at 5185.262 kb on + strand at 5185.400 kb on - strand, within ABI39_RS21060 at 5185.404 kb on + strand, within ABI39_RS21060 at 5185.404 kb on + strand, within ABI39_RS21060 at 5185.408 kb on + strand, within ABI39_RS21060 at 5185.503 kb on - strand, within ABI39_RS21060 at 5185.503 kb on - strand, within ABI39_RS21060 at 5185.613 kb on + strand, within ABI39_RS21060 at 5185.614 kb on - strand, within ABI39_RS21060 at 5185.786 kb on - strand, within ABI39_RS21060 at 5185.819 kb on - strand, within ABI39_RS21060 at 5186.052 kb on + strand, within ABI39_RS21060 at 5186.169 kb on + strand at 5186.180 kb on + strand at 5186.202 kb on + strand at 5186.215 kb on - strand at 5186.215 kb on - strand at 5186.215 kb on - strand at 5186.326 kb on - strand, within ABI39_RS21065 at 5186.428 kb on - strand, within ABI39_RS21065 at 5186.576 kb on - strand, within ABI39_RS21065 at 5186.600 kb on + strand, within ABI39_RS21065 at 5186.601 kb on - strand, within ABI39_RS21065 at 5186.730 kb on + strand, within ABI39_RS21065 at 5186.730 kb on + strand, within ABI39_RS21065 at 5186.731 kb on - strand, within ABI39_RS21065 at 5186.993 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (ultrapure) (C) remove 5,184,174 - ABI39_RS21050 0.73 -3.4 5,184,391 + ABI39_RS21050 0.89 -1.9 5,184,584 + -2.6 5,184,585 - -3.3 5,184,761 + ABI39_RS21055 0.34 -2.2 5,184,981 + ABI39_RS21055 0.71 -2.3 5,185,164 + -0.8 5,185,167 + -2.6 5,185,262 + -6.5 5,185,400 - ABI39_RS21060 0.23 -4.0 5,185,404 + ABI39_RS21060 0.23 -4.3 5,185,404 + ABI39_RS21060 0.23 -3.9 5,185,408 + ABI39_RS21060 0.24 -5.5 5,185,503 - ABI39_RS21060 0.33 -3.6 5,185,503 - ABI39_RS21060 0.33 -3.1 5,185,613 + ABI39_RS21060 0.44 -5.3 5,185,614 - ABI39_RS21060 0.44 -3.5 5,185,786 - ABI39_RS21060 0.62 -4.7 5,185,819 - ABI39_RS21060 0.65 -4.6 5,186,052 + ABI39_RS21060 0.88 -3.5 5,186,169 + -1.0 5,186,180 + -0.6 5,186,202 + +0.3 5,186,215 - -4.0 5,186,215 - -6.3 5,186,215 - -4.4 5,186,326 - ABI39_RS21065 0.15 -4.4 5,186,428 - ABI39_RS21065 0.28 -5.0 5,186,576 - ABI39_RS21065 0.47 -5.3 5,186,600 + ABI39_RS21065 0.50 -4.4 5,186,601 - ABI39_RS21065 0.50 -3.6 5,186,730 + ABI39_RS21065 0.66 -5.3 5,186,730 + ABI39_RS21065 0.66 -3.8 5,186,731 - ABI39_RS21065 0.67 -4.6 5,186,993 - -3.8
Or see this region's nucleotide sequence