Experiment: polygalacturonic (ultrapure) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02975 and ABI39_RS02980 are separated by 107 nucleotides ABI39_RS02980 and ABI39_RS02985 are separated by 23 nucleotides ABI39_RS02985 and ABI39_RS02990 are separated by 307 nucleotides
ABI39_RS02975: ABI39_RS02975 - argininosuccinate synthase, at 867,284 to 868,492
_RS02975
ABI39_RS02980: ABI39_RS02980 - N-acetyltransferase, at 868,600 to 869,157
_RS02980
ABI39_RS02985: ABI39_RS02985 - arginine repressor, at 869,181 to 869,657
_RS02985
ABI39_RS02990: ABI39_RS02990 - rhamnulokinase, at 869,965 to 871,443
_RS02990
Position (kb) 868
869
870 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 867.950 kb on + strand, within ABI39_RS02975 at 867.956 kb on - strand, within ABI39_RS02975 at 868.155 kb on - strand, within ABI39_RS02975 at 868.221 kb on + strand, within ABI39_RS02975 at 868.222 kb on - strand, within ABI39_RS02975 at 868.222 kb on - strand, within ABI39_RS02975 at 868.225 kb on + strand, within ABI39_RS02975 at 868.279 kb on - strand, within ABI39_RS02975 at 868.305 kb on + strand, within ABI39_RS02975 at 868.423 kb on - strand at 868.539 kb on - strand at 868.684 kb on - strand, within ABI39_RS02980 at 868.760 kb on + strand, within ABI39_RS02980 at 868.825 kb on - strand, within ABI39_RS02980 at 868.883 kb on - strand, within ABI39_RS02980 at 868.896 kb on + strand, within ABI39_RS02980 at 868.924 kb on + strand, within ABI39_RS02980 at 868.959 kb on + strand, within ABI39_RS02980 at 869.027 kb on + strand, within ABI39_RS02980 at 869.079 kb on + strand, within ABI39_RS02980 at 869.082 kb on + strand, within ABI39_RS02980 at 869.175 kb on - strand at 869.177 kb on + strand at 869.179 kb on + strand at 869.188 kb on - strand at 869.258 kb on + strand, within ABI39_RS02985 at 869.262 kb on - strand, within ABI39_RS02985 at 869.264 kb on + strand, within ABI39_RS02985 at 869.280 kb on - strand, within ABI39_RS02985 at 869.315 kb on + strand, within ABI39_RS02985 at 869.316 kb on - strand, within ABI39_RS02985 at 869.334 kb on - strand, within ABI39_RS02985 at 869.334 kb on - strand, within ABI39_RS02985 at 869.466 kb on + strand, within ABI39_RS02985 at 869.467 kb on - strand, within ABI39_RS02985 at 869.471 kb on - strand, within ABI39_RS02985 at 869.471 kb on - strand, within ABI39_RS02985 at 869.471 kb on - strand, within ABI39_RS02985 at 869.472 kb on + strand, within ABI39_RS02985 at 869.619 kb on - strand at 869.690 kb on + strand at 869.770 kb on - strand at 869.778 kb on - strand at 869.783 kb on + strand at 869.839 kb on - strand at 869.860 kb on + strand at 869.882 kb on - strand at 869.882 kb on - strand at 870.023 kb on + strand at 870.081 kb on + strand at 870.119 kb on - strand, within ABI39_RS02990 at 870.128 kb on - strand, within ABI39_RS02990 at 870.138 kb on + strand, within ABI39_RS02990
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (ultrapure) (C) remove 867,950 + ABI39_RS02975 0.55 -4.3 867,956 - ABI39_RS02975 0.56 -5.7 868,155 - ABI39_RS02975 0.72 -2.6 868,221 + ABI39_RS02975 0.78 -4.7 868,222 - ABI39_RS02975 0.78 -5.7 868,222 - ABI39_RS02975 0.78 -6.5 868,225 + ABI39_RS02975 0.78 -4.0 868,279 - ABI39_RS02975 0.82 -4.5 868,305 + ABI39_RS02975 0.84 -5.5 868,423 - -5.0 868,539 - +0.1 868,684 - ABI39_RS02980 0.15 -5.8 868,760 + ABI39_RS02980 0.29 -3.4 868,825 - ABI39_RS02980 0.40 -6.5 868,883 - ABI39_RS02980 0.51 -3.3 868,896 + ABI39_RS02980 0.53 -5.1 868,924 + ABI39_RS02980 0.58 -5.4 868,959 + ABI39_RS02980 0.64 -4.7 869,027 + ABI39_RS02980 0.77 -5.5 869,079 + ABI39_RS02980 0.86 -5.0 869,082 + ABI39_RS02980 0.86 -5.4 869,175 - -2.6 869,177 + -3.2 869,179 + -4.3 869,188 - +0.8 869,258 + ABI39_RS02985 0.16 -4.7 869,262 - ABI39_RS02985 0.17 -0.2 869,264 + ABI39_RS02985 0.17 -4.3 869,280 - ABI39_RS02985 0.21 -0.1 869,315 + ABI39_RS02985 0.28 -5.8 869,316 - ABI39_RS02985 0.28 +0.3 869,334 - ABI39_RS02985 0.32 +0.1 869,334 - ABI39_RS02985 0.32 -0.7 869,466 + ABI39_RS02985 0.60 -3.8 869,467 - ABI39_RS02985 0.60 -0.2 869,471 - ABI39_RS02985 0.61 -0.3 869,471 - ABI39_RS02985 0.61 -0.2 869,471 - ABI39_RS02985 0.61 +0.0 869,472 + ABI39_RS02985 0.61 -4.1 869,619 - -0.6 869,690 + -4.2 869,770 - +0.1 869,778 - +0.2 869,783 + -0.0 869,839 - +0.0 869,860 + -0.2 869,882 - -0.4 869,882 - -0.1 870,023 + +0.4 870,081 + -0.1 870,119 - ABI39_RS02990 0.10 +0.6 870,128 - ABI39_RS02990 0.11 +0.3 870,138 + ABI39_RS02990 0.12 +0.3
Or see this region's nucleotide sequence