Experiment: polygalacturonic (ultrapure) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02345 and ABI39_RS02350 are separated by 128 nucleotides ABI39_RS02350 and ABI39_RS02355 overlap by 4 nucleotides ABI39_RS02355 and ABI39_RS02360 are separated by 82 nucleotides
ABI39_RS02345: ABI39_RS02345 - LPS export ABC transporter ATP-binding protein, at 681,388 to 682,209
_RS02345
ABI39_RS02350: ABI39_RS02350 - ABC transporter permease, at 682,338 to 683,081
_RS02350
ABI39_RS02355: ABI39_RS02355 - ABC transporter ATP-binding protein, at 683,078 to 683,842
_RS02355
ABI39_RS02360: ABI39_RS02360 - ribosome biogenesis GTPase Der, at 683,925 to 685,238
_RS02360
Position (kb) 682
683
684 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 681.453 kb on + strand at 682.291 kb on + strand at 682.293 kb on + strand at 682.370 kb on + strand at 682.416 kb on - strand, within ABI39_RS02350 at 682.646 kb on + strand, within ABI39_RS02350 at 682.646 kb on + strand, within ABI39_RS02350 at 682.898 kb on - strand, within ABI39_RS02350 at 682.937 kb on + strand, within ABI39_RS02350 at 682.956 kb on + strand, within ABI39_RS02350 at 682.994 kb on - strand, within ABI39_RS02350 at 683.036 kb on + strand at 683.098 kb on - strand at 683.099 kb on + strand at 683.101 kb on + strand at 683.150 kb on - strand at 683.215 kb on + strand, within ABI39_RS02355 at 683.374 kb on - strand, within ABI39_RS02355 at 683.518 kb on + strand, within ABI39_RS02355 at 683.532 kb on + strand, within ABI39_RS02355 at 683.553 kb on + strand, within ABI39_RS02355 at 683.706 kb on - strand, within ABI39_RS02355 at 683.711 kb on + strand, within ABI39_RS02355 at 683.762 kb on - strand, within ABI39_RS02355 at 683.840 kb on + strand at 683.841 kb on - strand at 683.843 kb on + strand at 683.865 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (ultrapure) (C) remove 681,453 + -0.9 682,291 + -0.5 682,293 + -0.7 682,370 + -2.7 682,416 - ABI39_RS02350 0.10 -0.7 682,646 + ABI39_RS02350 0.41 -1.9 682,646 + ABI39_RS02350 0.41 -1.7 682,898 - ABI39_RS02350 0.75 -2.1 682,937 + ABI39_RS02350 0.81 -1.3 682,956 + ABI39_RS02350 0.83 -0.8 682,994 - ABI39_RS02350 0.88 -1.8 683,036 + -2.1 683,098 - -0.9 683,099 + -1.5 683,101 + -1.6 683,150 - -1.2 683,215 + ABI39_RS02355 0.18 -1.2 683,374 - ABI39_RS02355 0.39 -1.5 683,518 + ABI39_RS02355 0.58 -0.8 683,532 + ABI39_RS02355 0.59 -1.1 683,553 + ABI39_RS02355 0.62 -1.1 683,706 - ABI39_RS02355 0.82 -3.3 683,711 + ABI39_RS02355 0.83 -1.0 683,762 - ABI39_RS02355 0.89 -0.1 683,840 + +0.6 683,841 - +0.0 683,843 + +0.4 683,865 + -0.3
Or see this region's nucleotide sequence