Experiment: polygalacturonic (ultrapure) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01715 and ABI39_RS01720 are separated by 221 nucleotides ABI39_RS01720 and ABI39_RS01725 are separated by 366 nucleotides ABI39_RS01725 and ABI39_RS01730 are separated by 5 nucleotides
ABI39_RS01715: ABI39_RS01715 - hypothetical protein, at 516,991 to 517,263
_RS01715
ABI39_RS01720: ABI39_RS01720 - hypothetical protein, at 517,485 to 517,745
_RS01720
ABI39_RS01725: ABI39_RS01725 - electron transfer flavoprotein subunit beta/FixA family protein, at 518,112 to 519,005
_RS01725
ABI39_RS01730: ABI39_RS01730 - electron transfer flavoprotein subunit alpha/FixB family protein, at 519,011 to 520,030
_RS01730
Position (kb) 518
519
520 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 517.117 kb on - strand, within ABI39_RS01715 at 517.194 kb on + strand, within ABI39_RS01715 at 517.301 kb on + strand at 517.320 kb on + strand at 517.385 kb on - strand at 517.412 kb on + strand at 517.470 kb on + strand at 517.470 kb on + strand at 517.474 kb on + strand at 517.475 kb on - strand at 517.475 kb on - strand at 517.526 kb on + strand, within ABI39_RS01720 at 517.597 kb on + strand, within ABI39_RS01720 at 517.601 kb on + strand, within ABI39_RS01720 at 517.602 kb on + strand, within ABI39_RS01720 at 517.617 kb on + strand, within ABI39_RS01720 at 517.617 kb on + strand, within ABI39_RS01720 at 517.681 kb on + strand, within ABI39_RS01720 at 517.730 kb on + strand at 517.730 kb on + strand at 517.730 kb on + strand at 517.748 kb on + strand at 517.859 kb on + strand at 517.859 kb on + strand at 517.895 kb on + strand at 517.896 kb on - strand at 517.967 kb on + strand at 517.973 kb on - strand at 518.086 kb on + strand at 518.109 kb on + strand at 518.109 kb on + strand at 518.109 kb on + strand at 518.110 kb on - strand at 518.111 kb on + strand at 518.349 kb on + strand, within ABI39_RS01725 at 518.349 kb on + strand, within ABI39_RS01725 at 518.759 kb on + strand, within ABI39_RS01725 at 518.791 kb on + strand, within ABI39_RS01725 at 518.791 kb on + strand, within ABI39_RS01725 at 518.793 kb on + strand, within ABI39_RS01725 at 518.984 kb on - strand at 518.993 kb on + strand at 518.993 kb on + strand at 518.993 kb on + strand at 518.994 kb on - strand at 518.994 kb on - strand at 519.021 kb on + strand at 519.021 kb on + strand at 519.027 kb on + strand at 519.028 kb on - strand at 519.028 kb on - strand at 519.100 kb on + strand at 519.168 kb on + strand, within ABI39_RS01730 at 519.226 kb on + strand, within ABI39_RS01730 at 519.434 kb on + strand, within ABI39_RS01730 at 519.608 kb on + strand, within ABI39_RS01730 at 519.609 kb on - strand, within ABI39_RS01730 at 519.612 kb on + strand, within ABI39_RS01730 at 519.670 kb on + strand, within ABI39_RS01730 at 519.670 kb on + strand, within ABI39_RS01730 at 519.703 kb on + strand, within ABI39_RS01730 at 519.860 kb on - strand, within ABI39_RS01730
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (ultrapure) (C) remove 517,117 - ABI39_RS01715 0.46 +0.2 517,194 + ABI39_RS01715 0.74 -0.3 517,301 + +0.2 517,320 + -0.5 517,385 - -0.4 517,412 + +0.2 517,470 + +0.3 517,470 + -0.0 517,474 + -0.3 517,475 - -0.3 517,475 - -1.0 517,526 + ABI39_RS01720 0.16 -0.0 517,597 + ABI39_RS01720 0.43 -0.4 517,601 + ABI39_RS01720 0.44 -0.5 517,602 + ABI39_RS01720 0.45 +0.0 517,617 + ABI39_RS01720 0.51 -0.7 517,617 + ABI39_RS01720 0.51 +0.1 517,681 + ABI39_RS01720 0.75 +0.1 517,730 + -0.4 517,730 + -0.8 517,730 + +0.2 517,748 + +0.9 517,859 + +1.0 517,859 + -1.5 517,895 + -0.4 517,896 - +0.2 517,967 + +0.6 517,973 - +0.9 518,086 + +0.0 518,109 + -2.4 518,109 + -2.1 518,109 + -1.4 518,110 - -1.9 518,111 + -0.7 518,349 + ABI39_RS01725 0.27 -3.6 518,349 + ABI39_RS01725 0.27 -3.2 518,759 + ABI39_RS01725 0.72 -3.8 518,791 + ABI39_RS01725 0.76 -2.3 518,791 + ABI39_RS01725 0.76 -0.9 518,793 + ABI39_RS01725 0.76 -1.4 518,984 - -2.7 518,993 + -0.2 518,993 + -0.7 518,993 + -0.2 518,994 - -2.7 518,994 - -1.6 519,021 + -2.2 519,021 + -2.1 519,027 + -1.7 519,028 - -2.9 519,028 - -1.5 519,100 + -0.9 519,168 + ABI39_RS01730 0.15 -1.1 519,226 + ABI39_RS01730 0.21 -3.1 519,434 + ABI39_RS01730 0.41 -3.0 519,608 + ABI39_RS01730 0.59 -0.7 519,609 - ABI39_RS01730 0.59 -1.4 519,612 + ABI39_RS01730 0.59 -1.0 519,670 + ABI39_RS01730 0.65 -1.0 519,670 + ABI39_RS01730 0.65 -2.4 519,703 + ABI39_RS01730 0.68 -2.6 519,860 - ABI39_RS01730 0.83 -2.0
Or see this region's nucleotide sequence