Experiment: b-Glucan from Beet (1,2-b-Glucan) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS18135 and ABI39_RS18140 overlap by 4 nucleotides ABI39_RS18140 and ABI39_RS18145 overlap by 4 nucleotides
ABI39_RS18135: ABI39_RS18135 - hypothetical protein, at 4,576,237 to 4,577,439
_RS18135
ABI39_RS18140: ABI39_RS18140 - ATP-binding cassette domain-containing protein, at 4,577,436 to 4,578,080
_RS18140
ABI39_RS18145: ABI39_RS18145 - DUF4836 family protein, at 4,578,077 to 4,579,609
_RS18145
Position (kb) 4577
4578
4579 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4576.501 kb on + strand, within ABI39_RS18135 at 4576.524 kb on + strand, within ABI39_RS18135 at 4576.530 kb on + strand, within ABI39_RS18135 at 4576.546 kb on + strand, within ABI39_RS18135 at 4576.736 kb on - strand, within ABI39_RS18135 at 4576.797 kb on + strand, within ABI39_RS18135 at 4576.891 kb on + strand, within ABI39_RS18135 at 4576.966 kb on - strand, within ABI39_RS18135 at 4576.999 kb on - strand, within ABI39_RS18135 at 4577.136 kb on + strand, within ABI39_RS18135 at 4577.248 kb on - strand, within ABI39_RS18135 at 4577.266 kb on + strand, within ABI39_RS18135 at 4577.267 kb on - strand, within ABI39_RS18135 at 4577.328 kb on - strand at 4577.544 kb on - strand, within ABI39_RS18140 at 4577.899 kb on + strand, within ABI39_RS18140 at 4577.900 kb on - strand, within ABI39_RS18140 at 4577.918 kb on - strand, within ABI39_RS18140 at 4577.918 kb on - strand, within ABI39_RS18140 at 4577.919 kb on + strand, within ABI39_RS18140 at 4577.920 kb on - strand, within ABI39_RS18140 at 4577.920 kb on - strand, within ABI39_RS18140 at 4577.920 kb on - strand, within ABI39_RS18140 at 4578.069 kb on + strand at 4578.069 kb on + strand at 4578.071 kb on + strand at 4578.074 kb on + strand at 4578.098 kb on + strand at 4578.110 kb on + strand at 4578.110 kb on + strand at 4578.136 kb on + strand at 4578.143 kb on - strand at 4578.146 kb on + strand at 4578.187 kb on - strand at 4578.338 kb on - strand, within ABI39_RS18145 at 4578.444 kb on + strand, within ABI39_RS18145 at 4578.505 kb on + strand, within ABI39_RS18145 at 4578.506 kb on - strand, within ABI39_RS18145 at 4578.584 kb on - strand, within ABI39_RS18145 at 4578.635 kb on + strand, within ABI39_RS18145 at 4578.646 kb on + strand, within ABI39_RS18145 at 4578.646 kb on + strand, within ABI39_RS18145 at 4578.650 kb on + strand, within ABI39_RS18145 at 4578.688 kb on + strand, within ABI39_RS18145 at 4578.754 kb on + strand, within ABI39_RS18145 at 4578.904 kb on - strand, within ABI39_RS18145 at 4578.958 kb on + strand, within ABI39_RS18145 at 4578.961 kb on + strand, within ABI39_RS18145 at 4578.973 kb on + strand, within ABI39_RS18145 at 4579.043 kb on + strand, within ABI39_RS18145 at 4579.044 kb on - strand, within ABI39_RS18145 at 4579.048 kb on - strand, within ABI39_RS18145
Per-strain Table
Position Strand Gene LocusTag Fraction b-Glucan from Beet (1,2-b-Glucan) (C) remove 4,576,501 + ABI39_RS18135 0.22 +0.6 4,576,524 + ABI39_RS18135 0.24 -0.9 4,576,530 + ABI39_RS18135 0.24 +0.7 4,576,546 + ABI39_RS18135 0.26 -1.5 4,576,736 - ABI39_RS18135 0.41 +1.0 4,576,797 + ABI39_RS18135 0.47 -0.1 4,576,891 + ABI39_RS18135 0.54 +0.5 4,576,966 - ABI39_RS18135 0.61 -0.0 4,576,999 - ABI39_RS18135 0.63 -0.8 4,577,136 + ABI39_RS18135 0.75 -0.3 4,577,248 - ABI39_RS18135 0.84 -0.1 4,577,266 + ABI39_RS18135 0.86 +0.4 4,577,267 - ABI39_RS18135 0.86 +0.8 4,577,328 - -0.4 4,577,544 - ABI39_RS18140 0.17 -0.9 4,577,899 + ABI39_RS18140 0.72 +0.4 4,577,900 - ABI39_RS18140 0.72 -1.3 4,577,918 - ABI39_RS18140 0.75 -2.9 4,577,918 - ABI39_RS18140 0.75 +5.2 4,577,919 + ABI39_RS18140 0.75 -0.2 4,577,920 - ABI39_RS18140 0.75 +1.0 4,577,920 - ABI39_RS18140 0.75 -0.2 4,577,920 - ABI39_RS18140 0.75 -0.9 4,578,069 + -0.0 4,578,069 + +0.5 4,578,071 + -0.6 4,578,074 + -0.9 4,578,098 + -0.1 4,578,110 + -0.2 4,578,110 + -0.2 4,578,136 + -0.1 4,578,143 - -1.0 4,578,146 + -1.2 4,578,187 - -0.1 4,578,338 - ABI39_RS18145 0.17 -0.2 4,578,444 + ABI39_RS18145 0.24 +0.2 4,578,505 + ABI39_RS18145 0.28 -0.8 4,578,506 - ABI39_RS18145 0.28 +0.2 4,578,584 - ABI39_RS18145 0.33 -1.3 4,578,635 + ABI39_RS18145 0.36 -1.2 4,578,646 + ABI39_RS18145 0.37 +0.3 4,578,646 + ABI39_RS18145 0.37 -0.4 4,578,650 + ABI39_RS18145 0.37 +1.2 4,578,688 + ABI39_RS18145 0.40 +0.8 4,578,754 + ABI39_RS18145 0.44 -1.1 4,578,904 - ABI39_RS18145 0.54 -0.0 4,578,958 + ABI39_RS18145 0.57 -0.7 4,578,961 + ABI39_RS18145 0.58 +0.4 4,578,973 + ABI39_RS18145 0.58 -0.9 4,579,043 + ABI39_RS18145 0.63 +0.8 4,579,044 - ABI39_RS18145 0.63 +0.7 4,579,048 - ABI39_RS18145 0.63 +0.2
Or see this region's nucleotide sequence