Experiment: b-Glucan from Beet (1,2-b-Glucan) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS08680 and ABI39_RS08685 are separated by 12 nucleotides ABI39_RS08685 and ABI39_RS08690 are separated by 78 nucleotides ABI39_RS08690 and ABI39_RS21940 are separated by 34 nucleotides ABI39_RS21940 and ABI39_RS23180 are separated by 12 nucleotides ABI39_RS23180 and ABI39_RS08700 overlap by 2 nucleotides
ABI39_RS08680: ABI39_RS08680 - site-specific integrase, at 2,319,905 to 2,321,140
_RS08680
ABI39_RS08685: ABI39_RS08685 - hypothetical protein, at 2,321,153 to 2,321,515
_RS08685
ABI39_RS08690: ABI39_RS08690 - helix-turn-helix domain-containing protein, at 2,321,594 to 2,321,899
_RS08690
ABI39_RS21940: ABI39_RS21940 - helix-turn-helix domain-containing protein, at 2,321,934 to 2,322,233
_RS21940
ABI39_RS23180: ABI39_RS23180 - hypothetical protein, at 2,322,246 to 2,322,437
_RS23180
ABI39_RS08700: ABI39_RS08700 - helix-turn-helix domain-containing protein, at 2,322,436 to 2,322,792
_RS08700
Position (kb)
2321
2322 Strain fitness (log2 ratio)
-1
0
1 at 2320.359 kb on - strand, within ABI39_RS08680 at 2320.593 kb on + strand, within ABI39_RS08680 at 2320.653 kb on - strand, within ABI39_RS08680 at 2320.725 kb on - strand, within ABI39_RS08680 at 2320.927 kb on + strand, within ABI39_RS08680 at 2321.132 kb on - strand at 2321.167 kb on - strand at 2321.474 kb on + strand, within ABI39_RS08685 at 2321.998 kb on + strand, within ABI39_RS21940 at 2321.999 kb on - strand, within ABI39_RS21940 at 2322.073 kb on - strand, within ABI39_RS21940 at 2322.217 kb on - strand at 2322.217 kb on - strand at 2322.220 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction b-Glucan from Beet (1,2-b-Glucan) (C) remove 2,320,359 - ABI39_RS08680 0.37 +0.7 2,320,593 + ABI39_RS08680 0.56 -0.3 2,320,653 - ABI39_RS08680 0.61 +0.6 2,320,725 - ABI39_RS08680 0.66 -0.6 2,320,927 + ABI39_RS08680 0.83 +0.3 2,321,132 - +0.7 2,321,167 - -1.4 2,321,474 + ABI39_RS08685 0.88 +0.3 2,321,998 + ABI39_RS21940 0.21 -0.3 2,321,999 - ABI39_RS21940 0.22 +0.1 2,322,073 - ABI39_RS21940 0.46 -0.6 2,322,217 - -0.3 2,322,217 - -0.9 2,322,220 - -0.1
Or see this region's nucleotide sequence