Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS08685

Experiment: b-Glucan from Beet (1,2-b-Glucan) (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS08680 and ABI39_RS08685 are separated by 12 nucleotidesABI39_RS08685 and ABI39_RS08690 are separated by 78 nucleotidesABI39_RS08690 and ABI39_RS21940 are separated by 34 nucleotidesABI39_RS21940 and ABI39_RS23180 are separated by 12 nucleotidesABI39_RS23180 and ABI39_RS08700 overlap by 2 nucleotides ABI39_RS08680: ABI39_RS08680 - site-specific integrase, at 2,319,905 to 2,321,140 _RS08680 ABI39_RS08685: ABI39_RS08685 - hypothetical protein, at 2,321,153 to 2,321,515 _RS08685 ABI39_RS08690: ABI39_RS08690 - helix-turn-helix domain-containing protein, at 2,321,594 to 2,321,899 _RS08690 ABI39_RS21940: ABI39_RS21940 - helix-turn-helix domain-containing protein, at 2,321,934 to 2,322,233 _RS21940 ABI39_RS23180: ABI39_RS23180 - hypothetical protein, at 2,322,246 to 2,322,437 _RS23180 ABI39_RS08700: ABI39_RS08700 - helix-turn-helix domain-containing protein, at 2,322,436 to 2,322,792 _RS08700 Position (kb) 2321 2322Strain fitness (log2 ratio) -1 0 1at 2320.359 kb on - strand, within ABI39_RS08680at 2320.593 kb on + strand, within ABI39_RS08680at 2320.653 kb on - strand, within ABI39_RS08680at 2320.725 kb on - strand, within ABI39_RS08680at 2320.927 kb on + strand, within ABI39_RS08680at 2321.132 kb on - strandat 2321.167 kb on - strandat 2321.474 kb on + strand, within ABI39_RS08685at 2321.998 kb on + strand, within ABI39_RS21940at 2321.999 kb on - strand, within ABI39_RS21940at 2322.073 kb on - strand, within ABI39_RS21940at 2322.217 kb on - strandat 2322.217 kb on - strandat 2322.220 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Glucan from Beet (1,2-b-Glucan) (C)
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2,320,359 - ABI39_RS08680 0.37 +0.7
2,320,593 + ABI39_RS08680 0.56 -0.3
2,320,653 - ABI39_RS08680 0.61 +0.6
2,320,725 - ABI39_RS08680 0.66 -0.6
2,320,927 + ABI39_RS08680 0.83 +0.3
2,321,132 - +0.7
2,321,167 - -1.4
2,321,474 + ABI39_RS08685 0.88 +0.3
2,321,998 + ABI39_RS21940 0.21 -0.3
2,321,999 - ABI39_RS21940 0.22 +0.1
2,322,073 - ABI39_RS21940 0.46 -0.6
2,322,217 - -0.3
2,322,217 - -0.9
2,322,220 - -0.1

Or see this region's nucleotide sequence