Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03461

Experiment: T4 MOI1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_03460 and OHPLBJKB_03461 are separated by 366 nucleotidesOHPLBJKB_03461 and OHPLBJKB_03462 are separated by 187 nucleotides OHPLBJKB_03460: OHPLBJKB_03460 - 16S ribosomal RNA, at 3,617,762 to 3,619,299 _03460 OHPLBJKB_03461: OHPLBJKB_03461 - D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase, at 3,619,666 to 3,620,238 _03461 OHPLBJKB_03462: OHPLBJKB_03462 - Methionine import ATP-binding protein MetN, at 3,620,426 to 3,621,457 _03462 Position (kb) 3619 3620 3621Strain fitness (log2 ratio) -2 -1 0 1at 3619.599 kb on + strandat 3619.599 kb on + strandat 3619.641 kb on - strandat 3619.756 kb on - strand, within OHPLBJKB_03461at 3619.758 kb on + strand, within OHPLBJKB_03461at 3619.819 kb on - strand, within OHPLBJKB_03461at 3619.825 kb on + strand, within OHPLBJKB_03461at 3619.843 kb on - strand, within OHPLBJKB_03461at 3619.843 kb on - strand, within OHPLBJKB_03461at 3619.863 kb on + strand, within OHPLBJKB_03461at 3619.970 kb on + strand, within OHPLBJKB_03461at 3619.970 kb on + strand, within OHPLBJKB_03461at 3619.971 kb on - strand, within OHPLBJKB_03461at 3619.974 kb on + strand, within OHPLBJKB_03461at 3620.087 kb on - strand, within OHPLBJKB_03461at 3620.191 kb on - strandat 3620.245 kb on + strandat 3620.246 kb on - strandat 3620.246 kb on - strandat 3620.254 kb on - strandat 3620.274 kb on + strandat 3620.399 kb on + strandat 3620.405 kb on - strandat 3620.405 kb on - strandat 3620.413 kb on + strandat 3620.414 kb on - strandat 3620.416 kb on + strandat 3620.416 kb on + strandat 3620.417 kb on - strandat 3620.417 kb on - strandat 3620.417 kb on - strandat 3620.420 kb on + strandat 3620.420 kb on + strandat 3620.420 kb on + strandat 3620.421 kb on - strandat 3620.421 kb on - strandat 3620.431 kb on - strandat 3620.444 kb on - strandat 3620.525 kb on + strandat 3620.554 kb on + strand, within OHPLBJKB_03462at 3620.561 kb on - strand, within OHPLBJKB_03462at 3620.561 kb on - strand, within OHPLBJKB_03462at 3620.566 kb on + strand, within OHPLBJKB_03462at 3620.567 kb on - strand, within OHPLBJKB_03462at 3620.567 kb on - strand, within OHPLBJKB_03462at 3620.567 kb on - strand, within OHPLBJKB_03462at 3620.568 kb on + strand, within OHPLBJKB_03462at 3620.568 kb on + strand, within OHPLBJKB_03462at 3620.568 kb on + strand, within OHPLBJKB_03462at 3620.568 kb on + strand, within OHPLBJKB_03462at 3620.569 kb on - strand, within OHPLBJKB_03462at 3620.569 kb on - strand, within OHPLBJKB_03462at 3620.569 kb on - strand, within OHPLBJKB_03462at 3620.569 kb on - strand, within OHPLBJKB_03462at 3620.569 kb on - strand, within OHPLBJKB_03462at 3620.569 kb on - strand, within OHPLBJKB_03462at 3620.569 kb on - strand, within OHPLBJKB_03462at 3620.569 kb on - strand, within OHPLBJKB_03462at 3620.569 kb on - strand, within OHPLBJKB_03462at 3620.569 kb on - strand, within OHPLBJKB_03462at 3620.606 kb on - strand, within OHPLBJKB_03462at 3620.681 kb on - strand, within OHPLBJKB_03462at 3620.716 kb on + strand, within OHPLBJKB_03462at 3620.717 kb on - strand, within OHPLBJKB_03462at 3620.830 kb on + strand, within OHPLBJKB_03462at 3620.830 kb on + strand, within OHPLBJKB_03462at 3620.830 kb on + strand, within OHPLBJKB_03462at 3620.831 kb on - strand, within OHPLBJKB_03462at 3620.831 kb on - strand, within OHPLBJKB_03462at 3620.834 kb on + strand, within OHPLBJKB_03462at 3620.835 kb on - strand, within OHPLBJKB_03462at 3620.907 kb on + strand, within OHPLBJKB_03462at 3620.907 kb on + strand, within OHPLBJKB_03462at 3620.907 kb on + strand, within OHPLBJKB_03462at 3620.908 kb on - strand, within OHPLBJKB_03462at 3620.908 kb on - strand, within OHPLBJKB_03462at 3620.908 kb on - strand, within OHPLBJKB_03462at 3620.908 kb on - strand, within OHPLBJKB_03462at 3620.960 kb on - strand, within OHPLBJKB_03462at 3620.960 kb on - strand, within OHPLBJKB_03462at 3620.960 kb on - strand, within OHPLBJKB_03462at 3621.037 kb on - strand, within OHPLBJKB_03462at 3621.037 kb on - strand, within OHPLBJKB_03462at 3621.037 kb on - strand, within OHPLBJKB_03462at 3621.099 kb on + strand, within OHPLBJKB_03462at 3621.146 kb on - strand, within OHPLBJKB_03462at 3621.211 kb on + strand, within OHPLBJKB_03462at 3621.211 kb on + strand, within OHPLBJKB_03462

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction T4 MOI1
remove
3,619,599 + +0.5
3,619,599 + +0.3
3,619,641 - -0.5
3,619,756 - OHPLBJKB_03461 0.16 +1.6
3,619,758 + OHPLBJKB_03461 0.16 -0.0
3,619,819 - OHPLBJKB_03461 0.27 -0.4
3,619,825 + OHPLBJKB_03461 0.28 +1.2
3,619,843 - OHPLBJKB_03461 0.31 -0.4
3,619,843 - OHPLBJKB_03461 0.31 -0.4
3,619,863 + OHPLBJKB_03461 0.34 +0.4
3,619,970 + OHPLBJKB_03461 0.53 +0.6
3,619,970 + OHPLBJKB_03461 0.53 -1.8
3,619,971 - OHPLBJKB_03461 0.53 -0.1
3,619,974 + OHPLBJKB_03461 0.54 -0.6
3,620,087 - OHPLBJKB_03461 0.73 +0.4
3,620,191 - +1.0
3,620,245 + +1.0
3,620,246 - -0.0
3,620,246 - -0.4
3,620,254 - -0.2
3,620,274 + -0.6
3,620,399 + -1.1
3,620,405 - -0.5
3,620,405 - +0.3
3,620,413 + -0.4
3,620,414 - -0.6
3,620,416 + -0.3
3,620,416 + +0.0
3,620,417 - +0.1
3,620,417 - +0.2
3,620,417 - +0.2
3,620,420 + +1.1
3,620,420 + +0.3
3,620,420 + +0.1
3,620,421 - +1.4
3,620,421 - +0.2
3,620,431 - -1.5
3,620,444 - +1.1
3,620,525 + -2.6
3,620,554 + OHPLBJKB_03462 0.12 -0.6
3,620,561 - OHPLBJKB_03462 0.13 +0.2
3,620,561 - OHPLBJKB_03462 0.13 +0.4
3,620,566 + OHPLBJKB_03462 0.14 -0.8
3,620,567 - OHPLBJKB_03462 0.14 -0.4
3,620,567 - OHPLBJKB_03462 0.14 +0.3
3,620,567 - OHPLBJKB_03462 0.14 -0.0
3,620,568 + OHPLBJKB_03462 0.14 +0.8
3,620,568 + OHPLBJKB_03462 0.14 +0.0
3,620,568 + OHPLBJKB_03462 0.14 -1.0
3,620,568 + OHPLBJKB_03462 0.14 -0.2
3,620,569 - OHPLBJKB_03462 0.14 -0.1
3,620,569 - OHPLBJKB_03462 0.14 +0.0
3,620,569 - OHPLBJKB_03462 0.14 +0.3
3,620,569 - OHPLBJKB_03462 0.14 -0.4
3,620,569 - OHPLBJKB_03462 0.14 -0.7
3,620,569 - OHPLBJKB_03462 0.14 +1.1
3,620,569 - OHPLBJKB_03462 0.14 -0.1
3,620,569 - OHPLBJKB_03462 0.14 -1.2
3,620,569 - OHPLBJKB_03462 0.14 -0.4
3,620,569 - OHPLBJKB_03462 0.14 +0.7
3,620,606 - OHPLBJKB_03462 0.17 -0.1
3,620,681 - OHPLBJKB_03462 0.25 -0.6
3,620,716 + OHPLBJKB_03462 0.28 -0.0
3,620,717 - OHPLBJKB_03462 0.28 -0.2
3,620,830 + OHPLBJKB_03462 0.39 +0.7
3,620,830 + OHPLBJKB_03462 0.39 +0.6
3,620,830 + OHPLBJKB_03462 0.39 +0.3
3,620,831 - OHPLBJKB_03462 0.39 -0.4
3,620,831 - OHPLBJKB_03462 0.39 +0.2
3,620,834 + OHPLBJKB_03462 0.40 +0.3
3,620,835 - OHPLBJKB_03462 0.40 -0.7
3,620,907 + OHPLBJKB_03462 0.47 +0.4
3,620,907 + OHPLBJKB_03462 0.47 -1.3
3,620,907 + OHPLBJKB_03462 0.47 -0.0
3,620,908 - OHPLBJKB_03462 0.47 -1.8
3,620,908 - OHPLBJKB_03462 0.47 +0.5
3,620,908 - OHPLBJKB_03462 0.47 +0.6
3,620,908 - OHPLBJKB_03462 0.47 +1.4
3,620,960 - OHPLBJKB_03462 0.52 +0.3
3,620,960 - OHPLBJKB_03462 0.52 -0.0
3,620,960 - OHPLBJKB_03462 0.52 +0.3
3,621,037 - OHPLBJKB_03462 0.59 -0.9
3,621,037 - OHPLBJKB_03462 0.59 -1.5
3,621,037 - OHPLBJKB_03462 0.59 +0.4
3,621,099 + OHPLBJKB_03462 0.65 +0.9
3,621,146 - OHPLBJKB_03462 0.70 +0.3
3,621,211 + OHPLBJKB_03462 0.76 +1.4
3,621,211 + OHPLBJKB_03462 0.76 +0.0

Or see this region's nucleotide sequence