Experiment: T4 MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_03397 and OHPLBJKB_03398 are separated by 11 nucleotides OHPLBJKB_03398 and OHPLBJKB_03399 are separated by 287 nucleotides
OHPLBJKB_03397: OHPLBJKB_03397 - Gamma-glutamyl phosphate reductase, at 3,550,835 to 3,552,088
_03397
OHPLBJKB_03398: OHPLBJKB_03398 - Glutamate 5-kinase, at 3,552,100 to 3,553,203
_03398
OHPLBJKB_03399: OHPLBJKB_03399 - Outer membrane pore protein E, at 3,553,491 to 3,554,546
_03399
Position (kb)
3552
3553
3554 Strain fitness (log2 ratio)
-2
-1
0
1 at 3551.238 kb on - strand, within OHPLBJKB_03397 at 3551.238 kb on - strand, within OHPLBJKB_03397 at 3551.270 kb on + strand, within OHPLBJKB_03397 at 3551.329 kb on + strand, within OHPLBJKB_03397 at 3551.329 kb on + strand, within OHPLBJKB_03397 at 3551.329 kb on + strand, within OHPLBJKB_03397 at 3551.329 kb on + strand, within OHPLBJKB_03397 at 3551.329 kb on + strand, within OHPLBJKB_03397 at 3551.329 kb on + strand, within OHPLBJKB_03397 at 3551.329 kb on + strand, within OHPLBJKB_03397 at 3551.329 kb on + strand, within OHPLBJKB_03397 at 3551.329 kb on + strand, within OHPLBJKB_03397 at 3551.330 kb on - strand, within OHPLBJKB_03397 at 3551.330 kb on - strand, within OHPLBJKB_03397 at 3551.330 kb on - strand, within OHPLBJKB_03397 at 3551.330 kb on - strand, within OHPLBJKB_03397 at 3551.330 kb on - strand, within OHPLBJKB_03397 at 3551.330 kb on - strand, within OHPLBJKB_03397 at 3551.330 kb on - strand, within OHPLBJKB_03397 at 3551.330 kb on - strand, within OHPLBJKB_03397 at 3551.330 kb on - strand, within OHPLBJKB_03397 at 3551.330 kb on - strand, within OHPLBJKB_03397 at 3551.330 kb on - strand, within OHPLBJKB_03397 at 3551.372 kb on + strand, within OHPLBJKB_03397 at 3551.373 kb on - strand, within OHPLBJKB_03397 at 3551.390 kb on + strand, within OHPLBJKB_03397 at 3551.406 kb on + strand, within OHPLBJKB_03397 at 3551.407 kb on - strand, within OHPLBJKB_03397 at 3551.407 kb on - strand, within OHPLBJKB_03397 at 3551.407 kb on - strand, within OHPLBJKB_03397 at 3551.407 kb on - strand, within OHPLBJKB_03397 at 3551.407 kb on - strand, within OHPLBJKB_03397 at 3551.410 kb on + strand, within OHPLBJKB_03397 at 3551.417 kb on + strand, within OHPLBJKB_03397 at 3551.425 kb on + strand, within OHPLBJKB_03397 at 3551.425 kb on + strand, within OHPLBJKB_03397 at 3551.470 kb on + strand, within OHPLBJKB_03397 at 3551.471 kb on - strand, within OHPLBJKB_03397 at 3551.511 kb on + strand, within OHPLBJKB_03397 at 3551.511 kb on + strand, within OHPLBJKB_03397 at 3551.511 kb on + strand, within OHPLBJKB_03397 at 3551.511 kb on + strand, within OHPLBJKB_03397 at 3551.511 kb on + strand, within OHPLBJKB_03397 at 3551.512 kb on - strand, within OHPLBJKB_03397 at 3551.512 kb on - strand, within OHPLBJKB_03397 at 3551.512 kb on - strand, within OHPLBJKB_03397 at 3551.512 kb on - strand, within OHPLBJKB_03397 at 3551.512 kb on - strand, within OHPLBJKB_03397 at 3551.557 kb on + strand, within OHPLBJKB_03397 at 3551.733 kb on + strand, within OHPLBJKB_03397 at 3551.733 kb on + strand, within OHPLBJKB_03397 at 3551.733 kb on + strand, within OHPLBJKB_03397 at 3551.810 kb on + strand, within OHPLBJKB_03397 at 3552.046 kb on + strand at 3552.047 kb on - strand at 3552.047 kb on - strand at 3552.158 kb on - strand at 3552.158 kb on - strand at 3552.215 kb on + strand, within OHPLBJKB_03398 at 3552.364 kb on + strand, within OHPLBJKB_03398 at 3552.365 kb on - strand, within OHPLBJKB_03398 at 3552.629 kb on + strand, within OHPLBJKB_03398 at 3552.680 kb on + strand, within OHPLBJKB_03398 at 3552.680 kb on + strand, within OHPLBJKB_03398 at 3552.680 kb on + strand, within OHPLBJKB_03398 at 3552.681 kb on - strand, within OHPLBJKB_03398 at 3552.681 kb on - strand, within OHPLBJKB_03398 at 3552.681 kb on - strand, within OHPLBJKB_03398 at 3552.681 kb on - strand, within OHPLBJKB_03398 at 3552.819 kb on + strand, within OHPLBJKB_03398 at 3553.090 kb on + strand, within OHPLBJKB_03398 at 3553.090 kb on + strand, within OHPLBJKB_03398 at 3553.090 kb on + strand, within OHPLBJKB_03398 at 3553.090 kb on + strand, within OHPLBJKB_03398 at 3553.091 kb on - strand, within OHPLBJKB_03398 at 3553.091 kb on - strand, within OHPLBJKB_03398 at 3553.156 kb on + strand at 3553.347 kb on + strand at 3553.359 kb on - strand at 3553.564 kb on - strand at 3553.580 kb on + strand at 3553.617 kb on + strand, within OHPLBJKB_03399 at 3553.617 kb on + strand, within OHPLBJKB_03399 at 3553.618 kb on - strand, within OHPLBJKB_03399 at 3553.618 kb on - strand, within OHPLBJKB_03399 at 3553.619 kb on + strand, within OHPLBJKB_03399 at 3553.656 kb on + strand, within OHPLBJKB_03399 at 3553.800 kb on + strand, within OHPLBJKB_03399 at 3553.832 kb on + strand, within OHPLBJKB_03399 at 3553.848 kb on + strand, within OHPLBJKB_03399 at 3553.848 kb on + strand, within OHPLBJKB_03399 at 3553.848 kb on + strand, within OHPLBJKB_03399 at 3553.848 kb on + strand, within OHPLBJKB_03399 at 3553.849 kb on - strand, within OHPLBJKB_03399 at 3553.920 kb on - strand, within OHPLBJKB_03399 at 3554.073 kb on + strand, within OHPLBJKB_03399 at 3554.074 kb on - strand, within OHPLBJKB_03399 at 3554.112 kb on + strand, within OHPLBJKB_03399 at 3554.113 kb on - strand, within OHPLBJKB_03399 at 3554.114 kb on + strand, within OHPLBJKB_03399 at 3554.115 kb on - strand, within OHPLBJKB_03399
Per-strain Table
Position Strand Gene LocusTag Fraction T4 MOI1 remove 3,551,238 - OHPLBJKB_03397 0.32 -0.5 3,551,238 - OHPLBJKB_03397 0.32 +0.0 3,551,270 + OHPLBJKB_03397 0.35 +0.1 3,551,329 + OHPLBJKB_03397 0.39 +0.1 3,551,329 + OHPLBJKB_03397 0.39 -1.4 3,551,329 + OHPLBJKB_03397 0.39 -1.9 3,551,329 + OHPLBJKB_03397 0.39 -0.0 3,551,329 + OHPLBJKB_03397 0.39 +0.7 3,551,329 + OHPLBJKB_03397 0.39 +1.0 3,551,329 + OHPLBJKB_03397 0.39 -0.4 3,551,329 + OHPLBJKB_03397 0.39 +0.2 3,551,329 + OHPLBJKB_03397 0.39 +0.3 3,551,330 - OHPLBJKB_03397 0.39 +0.3 3,551,330 - OHPLBJKB_03397 0.39 -0.7 3,551,330 - OHPLBJKB_03397 0.39 -0.9 3,551,330 - OHPLBJKB_03397 0.39 -0.2 3,551,330 - OHPLBJKB_03397 0.39 +1.1 3,551,330 - OHPLBJKB_03397 0.39 +0.7 3,551,330 - OHPLBJKB_03397 0.39 -0.2 3,551,330 - OHPLBJKB_03397 0.39 -0.5 3,551,330 - OHPLBJKB_03397 0.39 +0.7 3,551,330 - OHPLBJKB_03397 0.39 +0.0 3,551,330 - OHPLBJKB_03397 0.39 +0.6 3,551,372 + OHPLBJKB_03397 0.43 +0.3 3,551,373 - OHPLBJKB_03397 0.43 +0.3 3,551,390 + OHPLBJKB_03397 0.44 -0.6 3,551,406 + OHPLBJKB_03397 0.46 +0.2 3,551,407 - OHPLBJKB_03397 0.46 -0.7 3,551,407 - OHPLBJKB_03397 0.46 +0.3 3,551,407 - OHPLBJKB_03397 0.46 -0.6 3,551,407 - OHPLBJKB_03397 0.46 -0.4 3,551,407 - OHPLBJKB_03397 0.46 -0.2 3,551,410 + OHPLBJKB_03397 0.46 +0.6 3,551,417 + OHPLBJKB_03397 0.46 -0.0 3,551,425 + OHPLBJKB_03397 0.47 -0.2 3,551,425 + OHPLBJKB_03397 0.47 -0.3 3,551,470 + OHPLBJKB_03397 0.51 +0.4 3,551,471 - OHPLBJKB_03397 0.51 -0.2 3,551,511 + OHPLBJKB_03397 0.54 -0.7 3,551,511 + OHPLBJKB_03397 0.54 -0.5 3,551,511 + OHPLBJKB_03397 0.54 -0.2 3,551,511 + OHPLBJKB_03397 0.54 -0.0 3,551,511 + OHPLBJKB_03397 0.54 +0.0 3,551,512 - OHPLBJKB_03397 0.54 -0.8 3,551,512 - OHPLBJKB_03397 0.54 +0.0 3,551,512 - OHPLBJKB_03397 0.54 -2.0 3,551,512 - OHPLBJKB_03397 0.54 +0.7 3,551,512 - OHPLBJKB_03397 0.54 +0.0 3,551,557 + OHPLBJKB_03397 0.58 +1.0 3,551,733 + OHPLBJKB_03397 0.72 -0.4 3,551,733 + OHPLBJKB_03397 0.72 -0.3 3,551,733 + OHPLBJKB_03397 0.72 -0.3 3,551,810 + OHPLBJKB_03397 0.78 +0.1 3,552,046 + -0.6 3,552,047 - -0.6 3,552,047 - +0.3 3,552,158 - +0.2 3,552,158 - -0.1 3,552,215 + OHPLBJKB_03398 0.10 -1.7 3,552,364 + OHPLBJKB_03398 0.24 +1.2 3,552,365 - OHPLBJKB_03398 0.24 -0.5 3,552,629 + OHPLBJKB_03398 0.48 -0.0 3,552,680 + OHPLBJKB_03398 0.53 -0.8 3,552,680 + OHPLBJKB_03398 0.53 -0.8 3,552,680 + OHPLBJKB_03398 0.53 -0.7 3,552,681 - OHPLBJKB_03398 0.53 -1.0 3,552,681 - OHPLBJKB_03398 0.53 -0.3 3,552,681 - OHPLBJKB_03398 0.53 +0.1 3,552,681 - OHPLBJKB_03398 0.53 -2.0 3,552,819 + OHPLBJKB_03398 0.65 +0.7 3,553,090 + OHPLBJKB_03398 0.90 +0.3 3,553,090 + OHPLBJKB_03398 0.90 +0.2 3,553,090 + OHPLBJKB_03398 0.90 -0.4 3,553,090 + OHPLBJKB_03398 0.90 -0.7 3,553,091 - OHPLBJKB_03398 0.90 +0.4 3,553,091 - OHPLBJKB_03398 0.90 -0.2 3,553,156 + -0.5 3,553,347 + -0.4 3,553,359 - -0.9 3,553,564 - +1.0 3,553,580 + -0.7 3,553,617 + OHPLBJKB_03399 0.12 -0.0 3,553,617 + OHPLBJKB_03399 0.12 +0.6 3,553,618 - OHPLBJKB_03399 0.12 +1.4 3,553,618 - OHPLBJKB_03399 0.12 -0.7 3,553,619 + OHPLBJKB_03399 0.12 -0.1 3,553,656 + OHPLBJKB_03399 0.16 +0.0 3,553,800 + OHPLBJKB_03399 0.29 -0.5 3,553,832 + OHPLBJKB_03399 0.32 +0.7 3,553,848 + OHPLBJKB_03399 0.34 +0.8 3,553,848 + OHPLBJKB_03399 0.34 +0.0 3,553,848 + OHPLBJKB_03399 0.34 -0.8 3,553,848 + OHPLBJKB_03399 0.34 -0.2 3,553,849 - OHPLBJKB_03399 0.34 -0.1 3,553,920 - OHPLBJKB_03399 0.41 +0.5 3,554,073 + OHPLBJKB_03399 0.55 -0.5 3,554,074 - OHPLBJKB_03399 0.55 -0.6 3,554,112 + OHPLBJKB_03399 0.59 +0.2 3,554,113 - OHPLBJKB_03399 0.59 +0.6 3,554,114 + OHPLBJKB_03399 0.59 -0.4 3,554,115 - OHPLBJKB_03399 0.59 -0.3
Or see this region's nucleotide sequence