Experiment: T4 MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_03042 and OHPLBJKB_03043 are separated by 380 nucleotides OHPLBJKB_03043 and OHPLBJKB_03044 are separated by 8 nucleotides OHPLBJKB_03044 and OHPLBJKB_03045 are separated by 23 nucleotides OHPLBJKB_03045 and OHPLBJKB_03046 are separated by 34 nucleotides OHPLBJKB_03046 and OHPLBJKB_03047 are separated by 15 nucleotides OHPLBJKB_03047 and OHPLBJKB_03048 are separated by 47 nucleotides OHPLBJKB_03048 and OHPLBJKB_03049 are separated by 37 nucleotides OHPLBJKB_03049 and OHPLBJKB_03050 are separated by 153 nucleotides
OHPLBJKB_03042: OHPLBJKB_03042 - Asparagine synthetase B [glutamine-hydrolyzing], at 3,174,451 to 3,176,115
_03042
OHPLBJKB_03043: OHPLBJKB_03043 - tRNA-Met, at 3,176,496 to 3,176,572
_03043
OHPLBJKB_03044: OHPLBJKB_03044 - tRNA-Leu, at 3,176,581 to 3,176,665
_03044
OHPLBJKB_03045: OHPLBJKB_03045 - tRNA-Gln, at 3,176,689 to 3,176,763
_03045
OHPLBJKB_03046: OHPLBJKB_03046 - tRNA-Gln, at 3,176,798 to 3,176,872
_03046
OHPLBJKB_03047: OHPLBJKB_03047 - tRNA-Met, at 3,176,888 to 3,176,964
_03047
OHPLBJKB_03048: OHPLBJKB_03048 - tRNA-Gln, at 3,177,012 to 3,177,086
_03048
OHPLBJKB_03049: OHPLBJKB_03049 - tRNA-Gln, at 3,177,124 to 3,177,198
_03049
OHPLBJKB_03050: OHPLBJKB_03050 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 3,177,352 to 3,178,527
_03050
Position (kb)
3176
3177 Strain fitness (log2 ratio)
-2
-1
0
1 at 3175.768 kb on + strand, within OHPLBJKB_03042 at 3175.769 kb on - strand, within OHPLBJKB_03042 at 3175.769 kb on - strand, within OHPLBJKB_03042 at 3175.769 kb on - strand, within OHPLBJKB_03042 at 3175.769 kb on - strand, within OHPLBJKB_03042 at 3175.825 kb on + strand, within OHPLBJKB_03042 at 3175.910 kb on - strand, within OHPLBJKB_03042 at 3175.936 kb on + strand, within OHPLBJKB_03042 at 3175.937 kb on - strand, within OHPLBJKB_03042 at 3176.107 kb on + strand at 3176.107 kb on + strand at 3176.107 kb on + strand at 3176.107 kb on + strand at 3176.107 kb on + strand at 3176.107 kb on + strand at 3176.107 kb on + strand at 3176.107 kb on + strand at 3176.107 kb on + strand at 3176.108 kb on - strand at 3176.108 kb on - strand at 3176.108 kb on - strand at 3176.109 kb on + strand at 3176.109 kb on + strand at 3176.109 kb on + strand at 3176.109 kb on + strand at 3176.109 kb on + strand at 3176.109 kb on + strand at 3176.109 kb on + strand at 3176.109 kb on + strand at 3176.109 kb on + strand at 3176.110 kb on - strand at 3176.110 kb on - strand at 3176.110 kb on - strand at 3176.110 kb on - strand at 3176.110 kb on - strand at 3176.110 kb on - strand at 3176.110 kb on - strand at 3176.110 kb on - strand at 3176.110 kb on - strand at 3176.110 kb on - strand at 3176.114 kb on - strand at 3176.159 kb on - strand at 3176.239 kb on + strand at 3176.239 kb on + strand at 3176.239 kb on + strand at 3176.240 kb on - strand at 3176.248 kb on - strand at 3176.255 kb on - strand at 3176.255 kb on - strand at 3176.260 kb on - strand at 3176.274 kb on - strand at 3176.274 kb on - strand at 3176.319 kb on + strand at 3176.319 kb on + strand at 3176.319 kb on + strand at 3176.320 kb on - strand at 3176.343 kb on - strand at 3176.343 kb on - strand at 3176.363 kb on - strand at 3176.363 kb on - strand at 3177.110 kb on + strand at 3177.110 kb on + strand at 3177.110 kb on + strand at 3177.110 kb on + strand at 3177.110 kb on + strand at 3177.110 kb on + strand at 3177.203 kb on - strand at 3177.319 kb on + strand at 3177.347 kb on + strand at 3177.347 kb on + strand at 3177.347 kb on + strand at 3177.347 kb on + strand at 3177.347 kb on + strand at 3177.348 kb on - strand at 3177.348 kb on - strand at 3177.348 kb on - strand at 3177.354 kb on - strand at 3177.368 kb on + strand at 3177.369 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction T4 MOI1 remove 3,175,768 + OHPLBJKB_03042 0.79 -1.0 3,175,769 - OHPLBJKB_03042 0.79 -1.9 3,175,769 - OHPLBJKB_03042 0.79 +0.6 3,175,769 - OHPLBJKB_03042 0.79 +0.4 3,175,769 - OHPLBJKB_03042 0.79 -1.7 3,175,825 + OHPLBJKB_03042 0.83 -0.5 3,175,910 - OHPLBJKB_03042 0.88 +1.1 3,175,936 + OHPLBJKB_03042 0.89 +0.0 3,175,937 - OHPLBJKB_03042 0.89 -0.2 3,176,107 + +0.1 3,176,107 + +0.8 3,176,107 + -1.2 3,176,107 + +0.2 3,176,107 + +1.0 3,176,107 + -0.2 3,176,107 + -1.0 3,176,107 + +1.3 3,176,107 + -0.2 3,176,108 - -0.1 3,176,108 - -0.5 3,176,108 - +0.3 3,176,109 + -1.1 3,176,109 + -0.1 3,176,109 + +0.0 3,176,109 + +0.1 3,176,109 + -1.2 3,176,109 + -0.1 3,176,109 + -0.8 3,176,109 + -0.5 3,176,109 + +0.2 3,176,110 - -0.1 3,176,110 - +0.2 3,176,110 - +0.3 3,176,110 - -1.0 3,176,110 - +0.1 3,176,110 - -0.4 3,176,110 - -0.3 3,176,110 - -0.7 3,176,110 - -0.4 3,176,110 - +0.4 3,176,114 - -0.1 3,176,159 - +0.2 3,176,239 + -0.7 3,176,239 + -0.1 3,176,239 + +0.3 3,176,240 - +0.7 3,176,248 - +0.4 3,176,255 - -0.3 3,176,255 - +0.4 3,176,260 - +0.3 3,176,274 - -0.1 3,176,274 - -0.7 3,176,319 + -0.2 3,176,319 + +0.6 3,176,319 + -0.2 3,176,320 - +0.3 3,176,343 - -0.1 3,176,343 - -0.5 3,176,363 - +0.6 3,176,363 - +0.5 3,177,110 + -0.3 3,177,110 + -0.7 3,177,110 + -0.5 3,177,110 + +0.0 3,177,110 + +0.3 3,177,110 + -0.3 3,177,203 - -0.6 3,177,319 + -0.1 3,177,347 + -0.4 3,177,347 + +0.9 3,177,347 + +1.5 3,177,347 + -1.0 3,177,347 + -1.3 3,177,348 - -2.0 3,177,348 - -1.1 3,177,348 - -0.3 3,177,354 - +0.5 3,177,368 + -0.4 3,177,369 - -0.2
Or see this region's nucleotide sequence