Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02320

Experiment: T4 MOI1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_02319 and OHPLBJKB_02320 are separated by 7 nucleotidesOHPLBJKB_02320 and OHPLBJKB_02321 are separated by 14 nucleotidesOHPLBJKB_02321 and OHPLBJKB_02322 are separated by 8 nucleotides OHPLBJKB_02319: OHPLBJKB_02319 - 1,2-phenylacetyl-CoA epoxidase, subunit E, at 2,421,951 to 2,423,021 _02319 OHPLBJKB_02320: OHPLBJKB_02320 - Putative 1,2-phenylacetyl-CoA epoxidase, subunit D, at 2,423,029 to 2,423,526 _02320 OHPLBJKB_02321: OHPLBJKB_02321 - 1,2-phenylacetyl-CoA epoxidase, subunit C, at 2,423,541 to 2,424,287 _02321 OHPLBJKB_02322: OHPLBJKB_02322 - 1,2-phenylacetyl-CoA epoxidase, subunit B, at 2,424,296 to 2,424,583 _02322 Position (kb) 2423 2424Strain fitness (log2 ratio) -2 -1 0 1at 2422.191 kb on - strand, within OHPLBJKB_02319at 2422.224 kb on + strand, within OHPLBJKB_02319at 2422.225 kb on - strand, within OHPLBJKB_02319at 2422.225 kb on - strand, within OHPLBJKB_02319at 2422.225 kb on - strand, within OHPLBJKB_02319at 2422.379 kb on + strand, within OHPLBJKB_02319at 2422.379 kb on + strand, within OHPLBJKB_02319at 2422.380 kb on - strand, within OHPLBJKB_02319at 2422.380 kb on - strand, within OHPLBJKB_02319at 2422.380 kb on - strand, within OHPLBJKB_02319at 2422.520 kb on - strand, within OHPLBJKB_02319at 2422.520 kb on - strand, within OHPLBJKB_02319at 2422.520 kb on - strand, within OHPLBJKB_02319at 2422.571 kb on + strand, within OHPLBJKB_02319at 2422.572 kb on - strand, within OHPLBJKB_02319at 2422.582 kb on + strand, within OHPLBJKB_02319at 2422.582 kb on + strand, within OHPLBJKB_02319at 2422.583 kb on - strand, within OHPLBJKB_02319at 2422.650 kb on - strand, within OHPLBJKB_02319at 2422.653 kb on - strand, within OHPLBJKB_02319at 2422.749 kb on - strand, within OHPLBJKB_02319at 2422.818 kb on - strand, within OHPLBJKB_02319at 2422.834 kb on + strand, within OHPLBJKB_02319at 2422.834 kb on + strand, within OHPLBJKB_02319at 2422.835 kb on - strand, within OHPLBJKB_02319at 2422.835 kb on - strand, within OHPLBJKB_02319at 2422.955 kb on + strandat 2422.956 kb on - strandat 2423.035 kb on - strandat 2423.035 kb on - strandat 2423.067 kb on + strandat 2423.067 kb on + strandat 2423.068 kb on - strandat 2423.078 kb on + strandat 2423.116 kb on - strand, within OHPLBJKB_02320at 2423.152 kb on + strand, within OHPLBJKB_02320at 2423.152 kb on + strand, within OHPLBJKB_02320at 2423.321 kb on - strand, within OHPLBJKB_02320at 2423.360 kb on + strand, within OHPLBJKB_02320at 2423.371 kb on - strand, within OHPLBJKB_02320at 2423.483 kb on - strandat 2423.543 kb on - strandat 2423.658 kb on + strand, within OHPLBJKB_02321at 2423.738 kb on + strand, within OHPLBJKB_02321at 2423.838 kb on + strand, within OHPLBJKB_02321at 2423.838 kb on + strand, within OHPLBJKB_02321at 2423.839 kb on - strand, within OHPLBJKB_02321at 2423.847 kb on - strand, within OHPLBJKB_02321at 2423.906 kb on + strand, within OHPLBJKB_02321at 2423.907 kb on - strand, within OHPLBJKB_02321at 2423.996 kb on - strand, within OHPLBJKB_02321at 2423.996 kb on - strand, within OHPLBJKB_02321at 2423.996 kb on - strand, within OHPLBJKB_02321at 2424.048 kb on + strand, within OHPLBJKB_02321at 2424.048 kb on + strand, within OHPLBJKB_02321at 2424.048 kb on + strand, within OHPLBJKB_02321at 2424.048 kb on + strand, within OHPLBJKB_02321at 2424.049 kb on - strand, within OHPLBJKB_02321at 2424.049 kb on - strand, within OHPLBJKB_02321at 2424.049 kb on - strand, within OHPLBJKB_02321at 2424.268 kb on + strandat 2424.269 kb on - strandat 2424.328 kb on - strand, within OHPLBJKB_02322at 2424.456 kb on + strand, within OHPLBJKB_02322at 2424.456 kb on + strand, within OHPLBJKB_02322at 2424.503 kb on + strand, within OHPLBJKB_02322at 2424.503 kb on + strand, within OHPLBJKB_02322

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction T4 MOI1
remove
2,422,191 - OHPLBJKB_02319 0.22 +0.4
2,422,224 + OHPLBJKB_02319 0.25 -0.1
2,422,225 - OHPLBJKB_02319 0.26 +0.8
2,422,225 - OHPLBJKB_02319 0.26 -0.8
2,422,225 - OHPLBJKB_02319 0.26 -0.5
2,422,379 + OHPLBJKB_02319 0.40 +0.4
2,422,379 + OHPLBJKB_02319 0.40 +0.8
2,422,380 - OHPLBJKB_02319 0.40 -0.2
2,422,380 - OHPLBJKB_02319 0.40 +0.2
2,422,380 - OHPLBJKB_02319 0.40 -0.2
2,422,520 - OHPLBJKB_02319 0.53 +0.4
2,422,520 - OHPLBJKB_02319 0.53 -0.5
2,422,520 - OHPLBJKB_02319 0.53 -0.5
2,422,571 + OHPLBJKB_02319 0.58 +0.4
2,422,572 - OHPLBJKB_02319 0.58 +0.7
2,422,582 + OHPLBJKB_02319 0.59 -1.0
2,422,582 + OHPLBJKB_02319 0.59 +1.3
2,422,583 - OHPLBJKB_02319 0.59 -1.6
2,422,650 - OHPLBJKB_02319 0.65 +0.4
2,422,653 - OHPLBJKB_02319 0.66 -0.1
2,422,749 - OHPLBJKB_02319 0.75 +0.5
2,422,818 - OHPLBJKB_02319 0.81 -0.9
2,422,834 + OHPLBJKB_02319 0.82 +1.5
2,422,834 + OHPLBJKB_02319 0.82 -0.1
2,422,835 - OHPLBJKB_02319 0.83 +0.9
2,422,835 - OHPLBJKB_02319 0.83 +0.7
2,422,955 + +0.3
2,422,956 - -1.3
2,423,035 - -0.5
2,423,035 - -0.7
2,423,067 + +1.5
2,423,067 + -0.1
2,423,068 - -0.2
2,423,078 + +1.2
2,423,116 - OHPLBJKB_02320 0.17 -0.5
2,423,152 + OHPLBJKB_02320 0.25 +0.1
2,423,152 + OHPLBJKB_02320 0.25 -2.1
2,423,321 - OHPLBJKB_02320 0.59 -0.5
2,423,360 + OHPLBJKB_02320 0.66 -0.2
2,423,371 - OHPLBJKB_02320 0.69 -0.5
2,423,483 - +0.2
2,423,543 - +0.2
2,423,658 + OHPLBJKB_02321 0.16 +0.6
2,423,738 + OHPLBJKB_02321 0.26 +0.4
2,423,838 + OHPLBJKB_02321 0.40 -0.9
2,423,838 + OHPLBJKB_02321 0.40 +0.3
2,423,839 - OHPLBJKB_02321 0.40 -0.8
2,423,847 - OHPLBJKB_02321 0.41 +0.5
2,423,906 + OHPLBJKB_02321 0.49 +0.2
2,423,907 - OHPLBJKB_02321 0.49 -0.4
2,423,996 - OHPLBJKB_02321 0.61 -0.5
2,423,996 - OHPLBJKB_02321 0.61 +0.6
2,423,996 - OHPLBJKB_02321 0.61 -1.6
2,424,048 + OHPLBJKB_02321 0.68 -0.4
2,424,048 + OHPLBJKB_02321 0.68 -0.3
2,424,048 + OHPLBJKB_02321 0.68 -0.1
2,424,048 + OHPLBJKB_02321 0.68 +0.7
2,424,049 - OHPLBJKB_02321 0.68 -0.9
2,424,049 - OHPLBJKB_02321 0.68 -0.4
2,424,049 - OHPLBJKB_02321 0.68 +0.0
2,424,268 + -0.8
2,424,269 - -0.9
2,424,328 - OHPLBJKB_02322 0.11 +0.5
2,424,456 + OHPLBJKB_02322 0.56 +1.1
2,424,456 + OHPLBJKB_02322 0.56 +0.6
2,424,503 + OHPLBJKB_02322 0.72 +0.1
2,424,503 + OHPLBJKB_02322 0.72 +0.6

Or see this region's nucleotide sequence