Experiment: T4 MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02153 and OHPLBJKB_02154 are separated by 190 nucleotides OHPLBJKB_02154 and OHPLBJKB_02155 are separated by 4 nucleotides OHPLBJKB_02155 and OHPLBJKB_02156 overlap by 53 nucleotides OHPLBJKB_02156 and OHPLBJKB_02157 are separated by 113 nucleotides OHPLBJKB_02157 and OHPLBJKB_02158 overlap by 4 nucleotides
OHPLBJKB_02153: OHPLBJKB_02153 - HTH-type transcriptional regulator GadW, at 2,231,530 to 2,232,243
_02153
OHPLBJKB_02154: OHPLBJKB_02154 - hypothetical protein, at 2,232,434 to 2,232,649
_02154
OHPLBJKB_02155: OHPLBJKB_02155 - hypothetical protein, at 2,232,654 to 2,233,205
_02155
OHPLBJKB_02156: OHPLBJKB_02156 - hypothetical protein, at 2,233,153 to 2,233,413
_02156
OHPLBJKB_02157: OHPLBJKB_02157 - Lysozyme RrrD, at 2,233,527 to 2,234,060
_02157
OHPLBJKB_02158: OHPLBJKB_02158 - hypothetical protein, at 2,234,057 to 2,234,554
_02158
Position (kb)
2232
2233
2234 Strain fitness (log2 ratio)
-2
-1
0
1 at 2231.744 kb on + strand, within OHPLBJKB_02153 at 2231.929 kb on - strand, within OHPLBJKB_02153 at 2231.955 kb on + strand, within OHPLBJKB_02153 at 2232.118 kb on + strand, within OHPLBJKB_02153 at 2232.248 kb on + strand at 2232.373 kb on - strand at 2232.373 kb on - strand at 2232.404 kb on - strand at 2232.448 kb on + strand at 2232.448 kb on + strand at 2232.448 kb on + strand at 2232.448 kb on + strand at 2232.549 kb on + strand, within OHPLBJKB_02154 at 2232.549 kb on + strand, within OHPLBJKB_02154 at 2232.549 kb on + strand, within OHPLBJKB_02154 at 2232.549 kb on + strand, within OHPLBJKB_02154 at 2232.549 kb on + strand, within OHPLBJKB_02154 at 2232.549 kb on + strand, within OHPLBJKB_02154 at 2232.550 kb on - strand, within OHPLBJKB_02154 at 2232.555 kb on + strand, within OHPLBJKB_02154 at 2232.556 kb on - strand, within OHPLBJKB_02154 at 2232.570 kb on + strand, within OHPLBJKB_02154 at 2232.570 kb on + strand, within OHPLBJKB_02154 at 2232.588 kb on - strand, within OHPLBJKB_02154 at 2232.603 kb on - strand, within OHPLBJKB_02154 at 2232.603 kb on - strand, within OHPLBJKB_02154 at 2232.647 kb on + strand at 2232.715 kb on + strand, within OHPLBJKB_02155 at 2232.869 kb on - strand, within OHPLBJKB_02155 at 2232.940 kb on - strand, within OHPLBJKB_02155 at 2232.940 kb on - strand, within OHPLBJKB_02155 at 2232.965 kb on + strand, within OHPLBJKB_02155 at 2233.135 kb on - strand, within OHPLBJKB_02155 at 2233.155 kb on - strand at 2233.203 kb on + strand at 2233.265 kb on + strand, within OHPLBJKB_02156 at 2233.294 kb on - strand, within OHPLBJKB_02156 at 2233.348 kb on + strand, within OHPLBJKB_02156 at 2233.349 kb on - strand, within OHPLBJKB_02156 at 2233.392 kb on + strand at 2233.392 kb on + strand at 2233.396 kb on + strand at 2233.397 kb on - strand at 2233.397 kb on - strand at 2233.413 kb on + strand at 2233.414 kb on - strand at 2233.482 kb on + strand at 2233.482 kb on + strand at 2233.483 kb on - strand at 2233.523 kb on - strand at 2233.534 kb on + strand at 2233.535 kb on - strand at 2233.545 kb on + strand at 2233.546 kb on - strand at 2233.670 kb on - strand, within OHPLBJKB_02157 at 2233.804 kb on + strand, within OHPLBJKB_02157 at 2233.804 kb on + strand, within OHPLBJKB_02157 at 2233.805 kb on - strand, within OHPLBJKB_02157 at 2233.874 kb on + strand, within OHPLBJKB_02157 at 2233.875 kb on - strand, within OHPLBJKB_02157 at 2233.897 kb on - strand, within OHPLBJKB_02157 at 2233.897 kb on - strand, within OHPLBJKB_02157 at 2233.992 kb on - strand, within OHPLBJKB_02157 at 2233.998 kb on + strand, within OHPLBJKB_02157 at 2234.035 kb on + strand at 2234.068 kb on - strand at 2234.111 kb on - strand, within OHPLBJKB_02158
Per-strain Table
Position Strand Gene LocusTag Fraction T4 MOI1 remove 2,231,744 + OHPLBJKB_02153 0.30 -0.0 2,231,929 - OHPLBJKB_02153 0.56 -0.6 2,231,955 + OHPLBJKB_02153 0.60 +0.1 2,232,118 + OHPLBJKB_02153 0.82 +0.6 2,232,248 + +0.6 2,232,373 - +0.8 2,232,373 - +0.7 2,232,404 - -0.0 2,232,448 + -2.0 2,232,448 + +0.4 2,232,448 + -1.3 2,232,448 + -0.8 2,232,549 + OHPLBJKB_02154 0.53 +0.5 2,232,549 + OHPLBJKB_02154 0.53 -0.6 2,232,549 + OHPLBJKB_02154 0.53 -0.6 2,232,549 + OHPLBJKB_02154 0.53 +0.9 2,232,549 + OHPLBJKB_02154 0.53 -0.8 2,232,549 + OHPLBJKB_02154 0.53 +0.8 2,232,550 - OHPLBJKB_02154 0.54 +0.5 2,232,555 + OHPLBJKB_02154 0.56 -0.3 2,232,556 - OHPLBJKB_02154 0.56 +0.8 2,232,570 + OHPLBJKB_02154 0.63 -1.6 2,232,570 + OHPLBJKB_02154 0.63 -1.0 2,232,588 - OHPLBJKB_02154 0.71 +0.2 2,232,603 - OHPLBJKB_02154 0.78 -0.0 2,232,603 - OHPLBJKB_02154 0.78 -0.8 2,232,647 + +0.2 2,232,715 + OHPLBJKB_02155 0.11 -1.6 2,232,869 - OHPLBJKB_02155 0.39 -0.2 2,232,940 - OHPLBJKB_02155 0.52 +0.3 2,232,940 - OHPLBJKB_02155 0.52 -0.8 2,232,965 + OHPLBJKB_02155 0.56 -1.6 2,233,135 - OHPLBJKB_02155 0.87 +0.6 2,233,155 - -1.0 2,233,203 + -2.0 2,233,265 + OHPLBJKB_02156 0.43 -0.5 2,233,294 - OHPLBJKB_02156 0.54 +0.4 2,233,348 + OHPLBJKB_02156 0.75 +0.9 2,233,349 - OHPLBJKB_02156 0.75 +0.3 2,233,392 + -0.2 2,233,392 + +0.1 2,233,396 + +0.0 2,233,397 - -0.1 2,233,397 - -0.5 2,233,413 + -0.5 2,233,414 - -0.3 2,233,482 + -0.4 2,233,482 + +0.7 2,233,483 - -0.5 2,233,523 - -0.8 2,233,534 + -0.9 2,233,535 - +0.2 2,233,545 + -0.4 2,233,546 - -0.5 2,233,670 - OHPLBJKB_02157 0.27 -0.3 2,233,804 + OHPLBJKB_02157 0.52 -0.5 2,233,804 + OHPLBJKB_02157 0.52 +0.4 2,233,805 - OHPLBJKB_02157 0.52 +0.2 2,233,874 + OHPLBJKB_02157 0.65 +0.0 2,233,875 - OHPLBJKB_02157 0.65 +0.3 2,233,897 - OHPLBJKB_02157 0.69 -0.2 2,233,897 - OHPLBJKB_02157 0.69 +0.4 2,233,992 - OHPLBJKB_02157 0.87 -0.6 2,233,998 + OHPLBJKB_02157 0.88 -0.1 2,234,035 + +0.1 2,234,068 - -0.0 2,234,111 - OHPLBJKB_02158 0.11 -0.8
Or see this region's nucleotide sequence