Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01506

Experiment: T4 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01505 and OHPLBJKB_01506 are separated by 6 nucleotidesOHPLBJKB_01506 and OHPLBJKB_01507 overlap by 14 nucleotidesOHPLBJKB_01507 and OHPLBJKB_01508 overlap by 4 nucleotides OHPLBJKB_01505: OHPLBJKB_01505 - Periplasmic nitrate reductase, at 1,566,894 to 1,569,380 _01505 OHPLBJKB_01506: OHPLBJKB_01506 - Ferredoxin-type protein NapG, at 1,569,387 to 1,570,082 _01506 OHPLBJKB_01507: OHPLBJKB_01507 - Ferredoxin-type protein NapH, at 1,570,069 to 1,570,932 _01507 OHPLBJKB_01508: OHPLBJKB_01508 - Periplasmic nitrate reductase, electron transfer subunit, at 1,570,929 to 1,571,378 _01508 Position (kb) 1569 1570 1571Strain fitness (log2 ratio) -2 -1 0 1 2at 1568.516 kb on + strand, within OHPLBJKB_01505at 1568.578 kb on + strand, within OHPLBJKB_01505at 1568.614 kb on + strand, within OHPLBJKB_01505at 1568.614 kb on + strand, within OHPLBJKB_01505at 1568.614 kb on + strand, within OHPLBJKB_01505at 1568.615 kb on - strand, within OHPLBJKB_01505at 1568.667 kb on + strand, within OHPLBJKB_01505at 1568.679 kb on + strand, within OHPLBJKB_01505at 1568.790 kb on + strand, within OHPLBJKB_01505at 1568.791 kb on - strand, within OHPLBJKB_01505at 1568.923 kb on - strand, within OHPLBJKB_01505at 1568.944 kb on - strand, within OHPLBJKB_01505at 1568.944 kb on - strand, within OHPLBJKB_01505at 1569.027 kb on + strand, within OHPLBJKB_01505at 1569.028 kb on - strand, within OHPLBJKB_01505at 1569.080 kb on + strand, within OHPLBJKB_01505at 1569.134 kb on + strandat 1569.264 kb on + strandat 1569.264 kb on + strandat 1569.264 kb on + strandat 1569.264 kb on + strandat 1569.265 kb on - strandat 1569.265 kb on - strandat 1569.378 kb on + strandat 1569.378 kb on + strandat 1569.378 kb on + strandat 1569.378 kb on + strandat 1569.378 kb on + strandat 1569.379 kb on - strandat 1569.379 kb on - strandat 1569.386 kb on + strandat 1569.387 kb on - strandat 1569.487 kb on + strand, within OHPLBJKB_01506at 1569.541 kb on + strand, within OHPLBJKB_01506at 1569.604 kb on - strand, within OHPLBJKB_01506at 1569.613 kb on + strand, within OHPLBJKB_01506at 1569.613 kb on + strand, within OHPLBJKB_01506at 1569.614 kb on - strand, within OHPLBJKB_01506at 1569.957 kb on - strand, within OHPLBJKB_01506at 1569.970 kb on + strand, within OHPLBJKB_01506at 1570.031 kb on - strandat 1570.228 kb on + strand, within OHPLBJKB_01507at 1570.229 kb on - strand, within OHPLBJKB_01507at 1570.229 kb on - strand, within OHPLBJKB_01507at 1570.236 kb on + strand, within OHPLBJKB_01507at 1570.237 kb on - strand, within OHPLBJKB_01507at 1570.237 kb on - strand, within OHPLBJKB_01507at 1570.355 kb on - strand, within OHPLBJKB_01507at 1570.355 kb on - strand, within OHPLBJKB_01507at 1570.377 kb on - strand, within OHPLBJKB_01507at 1570.411 kb on - strand, within OHPLBJKB_01507at 1570.418 kb on + strand, within OHPLBJKB_01507at 1570.608 kb on + strand, within OHPLBJKB_01507at 1570.608 kb on + strand, within OHPLBJKB_01507at 1570.634 kb on + strand, within OHPLBJKB_01507at 1570.635 kb on - strand, within OHPLBJKB_01507at 1570.702 kb on - strand, within OHPLBJKB_01507at 1570.716 kb on + strand, within OHPLBJKB_01507at 1570.756 kb on - strand, within OHPLBJKB_01507at 1570.794 kb on - strand, within OHPLBJKB_01507at 1570.794 kb on - strand, within OHPLBJKB_01507at 1570.889 kb on + strandat 1570.889 kb on + strandat 1570.889 kb on + strandat 1570.889 kb on + strandat 1570.889 kb on + strandat 1570.889 kb on + strandat 1570.890 kb on - strandat 1570.890 kb on - strandat 1570.890 kb on - strandat 1570.890 kb on - strandat 1570.890 kb on - strandat 1570.893 kb on + strandat 1570.893 kb on + strandat 1570.894 kb on - strandat 1570.898 kb on + strandat 1570.902 kb on + strandat 1570.902 kb on + strandat 1570.902 kb on + strandat 1570.902 kb on + strandat 1570.902 kb on + strandat 1570.903 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T4 MOI1
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1,568,516 + OHPLBJKB_01505 0.65 +0.7
1,568,578 + OHPLBJKB_01505 0.68 +0.4
1,568,614 + OHPLBJKB_01505 0.69 -0.0
1,568,614 + OHPLBJKB_01505 0.69 -0.1
1,568,614 + OHPLBJKB_01505 0.69 +0.1
1,568,615 - OHPLBJKB_01505 0.69 -0.8
1,568,667 + OHPLBJKB_01505 0.71 +0.8
1,568,679 + OHPLBJKB_01505 0.72 +0.7
1,568,790 + OHPLBJKB_01505 0.76 -0.1
1,568,791 - OHPLBJKB_01505 0.76 +0.4
1,568,923 - OHPLBJKB_01505 0.82 +1.0
1,568,944 - OHPLBJKB_01505 0.82 +0.5
1,568,944 - OHPLBJKB_01505 0.82 +0.2
1,569,027 + OHPLBJKB_01505 0.86 -0.2
1,569,028 - OHPLBJKB_01505 0.86 -0.9
1,569,080 + OHPLBJKB_01505 0.88 -0.2
1,569,134 + +0.5
1,569,264 + +1.0
1,569,264 + +0.7
1,569,264 + -1.0
1,569,264 + -0.3
1,569,265 - +0.2
1,569,265 - -0.2
1,569,378 + +0.1
1,569,378 + +0.1
1,569,378 + +0.4
1,569,378 + -1.9
1,569,378 + +0.4
1,569,379 - +0.8
1,569,379 - +0.3
1,569,386 + -0.3
1,569,387 - -0.0
1,569,487 + OHPLBJKB_01506 0.14 +0.0
1,569,541 + OHPLBJKB_01506 0.22 -0.8
1,569,604 - OHPLBJKB_01506 0.31 +0.1
1,569,613 + OHPLBJKB_01506 0.32 -0.5
1,569,613 + OHPLBJKB_01506 0.32 -1.2
1,569,614 - OHPLBJKB_01506 0.33 -0.3
1,569,957 - OHPLBJKB_01506 0.82 -0.1
1,569,970 + OHPLBJKB_01506 0.84 -0.9
1,570,031 - +1.1
1,570,228 + OHPLBJKB_01507 0.18 +0.1
1,570,229 - OHPLBJKB_01507 0.19 -0.8
1,570,229 - OHPLBJKB_01507 0.19 -1.9
1,570,236 + OHPLBJKB_01507 0.19 +0.8
1,570,237 - OHPLBJKB_01507 0.19 -2.6
1,570,237 - OHPLBJKB_01507 0.19 +0.6
1,570,355 - OHPLBJKB_01507 0.33 +0.4
1,570,355 - OHPLBJKB_01507 0.33 +0.8
1,570,377 - OHPLBJKB_01507 0.36 +0.8
1,570,411 - OHPLBJKB_01507 0.40 -0.7
1,570,418 + OHPLBJKB_01507 0.40 -0.5
1,570,608 + OHPLBJKB_01507 0.62 +1.1
1,570,608 + OHPLBJKB_01507 0.62 +0.4
1,570,634 + OHPLBJKB_01507 0.65 -0.2
1,570,635 - OHPLBJKB_01507 0.66 -1.1
1,570,702 - OHPLBJKB_01507 0.73 -0.5
1,570,716 + OHPLBJKB_01507 0.75 +0.6
1,570,756 - OHPLBJKB_01507 0.80 -0.5
1,570,794 - OHPLBJKB_01507 0.84 -0.2
1,570,794 - OHPLBJKB_01507 0.84 -0.6
1,570,889 + -0.7
1,570,889 + +0.0
1,570,889 + -0.4
1,570,889 + -0.5
1,570,889 + -0.8
1,570,889 + +0.1
1,570,890 - -0.3
1,570,890 - -1.0
1,570,890 - +0.3
1,570,890 - +2.1
1,570,890 - -0.0
1,570,893 + +0.3
1,570,893 + -0.9
1,570,894 - +0.0
1,570,898 + +0.5
1,570,902 + +0.1
1,570,902 + +0.3
1,570,902 + +1.0
1,570,902 + +1.1
1,570,902 + -0.5
1,570,903 - +0.4

Or see this region's nucleotide sequence