Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00566

Experiment: T4 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00565 and OHPLBJKB_00566 are separated by 350 nucleotidesOHPLBJKB_00566 and OHPLBJKB_00567 overlap by 4 nucleotidesOHPLBJKB_00567 and OHPLBJKB_00568 are separated by 17 nucleotides OHPLBJKB_00565: OHPLBJKB_00565 - Putative D-galactosamine-6-phosphate deaminase AgaS, at 576,846 to 578,000 _00565 OHPLBJKB_00566: OHPLBJKB_00566 - N-acetylgalactosamine-6-phosphate deacetylase, at 578,351 to 579,484 _00566 OHPLBJKB_00567: OHPLBJKB_00567 - PTS system mannose-specific EIIAB component, at 579,481 to 579,915 _00567 OHPLBJKB_00568: OHPLBJKB_00568 - PTS system mannose-specific EIID component, at 579,933 to 580,811 _00568 Position (kb) 578 579 580Strain fitness (log2 ratio) -2 -1 0 1at 577.708 kb on + strand, within OHPLBJKB_00565at 577.767 kb on - strand, within OHPLBJKB_00565at 577.857 kb on + strand, within OHPLBJKB_00565at 577.874 kb on + strand, within OHPLBJKB_00565at 577.875 kb on - strand, within OHPLBJKB_00565at 577.890 kb on + strandat 577.961 kb on + strandat 578.001 kb on - strandat 578.209 kb on - strandat 578.240 kb on + strandat 578.240 kb on + strandat 578.240 kb on + strandat 578.240 kb on + strandat 578.240 kb on + strandat 578.241 kb on - strandat 578.241 kb on - strandat 578.241 kb on - strandat 578.241 kb on - strandat 578.363 kb on + strandat 578.363 kb on + strandat 578.497 kb on + strand, within OHPLBJKB_00566at 578.570 kb on - strand, within OHPLBJKB_00566at 578.636 kb on + strand, within OHPLBJKB_00566at 578.637 kb on - strand, within OHPLBJKB_00566at 578.637 kb on - strand, within OHPLBJKB_00566at 578.637 kb on - strand, within OHPLBJKB_00566at 578.641 kb on + strand, within OHPLBJKB_00566at 578.641 kb on + strand, within OHPLBJKB_00566at 578.641 kb on + strand, within OHPLBJKB_00566at 578.641 kb on + strand, within OHPLBJKB_00566at 578.641 kb on + strand, within OHPLBJKB_00566at 578.642 kb on - strand, within OHPLBJKB_00566at 578.642 kb on - strand, within OHPLBJKB_00566at 578.642 kb on - strand, within OHPLBJKB_00566at 578.642 kb on - strand, within OHPLBJKB_00566at 578.825 kb on + strand, within OHPLBJKB_00566at 578.825 kb on + strand, within OHPLBJKB_00566at 578.826 kb on - strand, within OHPLBJKB_00566at 578.826 kb on - strand, within OHPLBJKB_00566at 578.826 kb on - strand, within OHPLBJKB_00566at 578.844 kb on + strand, within OHPLBJKB_00566at 578.844 kb on + strand, within OHPLBJKB_00566at 578.844 kb on + strand, within OHPLBJKB_00566at 578.844 kb on + strand, within OHPLBJKB_00566at 578.844 kb on + strand, within OHPLBJKB_00566at 578.844 kb on + strand, within OHPLBJKB_00566at 578.845 kb on - strand, within OHPLBJKB_00566at 578.845 kb on - strand, within OHPLBJKB_00566at 578.845 kb on - strand, within OHPLBJKB_00566at 578.845 kb on - strand, within OHPLBJKB_00566at 578.845 kb on - strand, within OHPLBJKB_00566at 578.931 kb on - strand, within OHPLBJKB_00566at 578.944 kb on + strand, within OHPLBJKB_00566at 578.944 kb on + strand, within OHPLBJKB_00566at 579.003 kb on - strand, within OHPLBJKB_00566at 579.102 kb on + strand, within OHPLBJKB_00566at 579.102 kb on + strand, within OHPLBJKB_00566at 579.103 kb on - strand, within OHPLBJKB_00566at 579.103 kb on - strand, within OHPLBJKB_00566at 579.117 kb on + strand, within OHPLBJKB_00566at 579.170 kb on - strand, within OHPLBJKB_00566at 579.170 kb on - strand, within OHPLBJKB_00566at 579.170 kb on - strand, within OHPLBJKB_00566at 579.193 kb on + strand, within OHPLBJKB_00566at 579.194 kb on - strand, within OHPLBJKB_00566at 579.197 kb on - strand, within OHPLBJKB_00566at 579.293 kb on + strand, within OHPLBJKB_00566at 579.294 kb on - strand, within OHPLBJKB_00566at 579.317 kb on + strand, within OHPLBJKB_00566at 579.318 kb on - strand, within OHPLBJKB_00566at 579.333 kb on + strand, within OHPLBJKB_00566at 579.575 kb on - strand, within OHPLBJKB_00567at 579.575 kb on - strand, within OHPLBJKB_00567at 579.783 kb on + strand, within OHPLBJKB_00567at 579.783 kb on + strand, within OHPLBJKB_00567at 579.783 kb on + strand, within OHPLBJKB_00567at 579.783 kb on + strand, within OHPLBJKB_00567at 579.783 kb on + strand, within OHPLBJKB_00567at 579.784 kb on - strand, within OHPLBJKB_00567at 579.907 kb on - strandat 579.918 kb on - strandat 579.920 kb on + strandat 579.978 kb on - strandat 580.089 kb on + strand, within OHPLBJKB_00568at 580.095 kb on - strand, within OHPLBJKB_00568at 580.144 kb on + strand, within OHPLBJKB_00568at 580.144 kb on + strand, within OHPLBJKB_00568at 580.144 kb on + strand, within OHPLBJKB_00568at 580.145 kb on - strand, within OHPLBJKB_00568at 580.145 kb on - strand, within OHPLBJKB_00568at 580.145 kb on - strand, within OHPLBJKB_00568at 580.145 kb on - strand, within OHPLBJKB_00568at 580.145 kb on - strand, within OHPLBJKB_00568at 580.145 kb on - strand, within OHPLBJKB_00568at 580.145 kb on - strand, within OHPLBJKB_00568at 580.145 kb on - strand, within OHPLBJKB_00568at 580.185 kb on - strand, within OHPLBJKB_00568at 580.252 kb on + strand, within OHPLBJKB_00568at 580.252 kb on + strand, within OHPLBJKB_00568at 580.258 kb on + strand, within OHPLBJKB_00568at 580.259 kb on - strand, within OHPLBJKB_00568at 580.259 kb on - strand, within OHPLBJKB_00568at 580.469 kb on + strand, within OHPLBJKB_00568at 580.469 kb on + strand, within OHPLBJKB_00568at 580.470 kb on - strand, within OHPLBJKB_00568

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Per-strain Table

Position Strand Gene LocusTag Fraction T4 MOI1
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577,708 + OHPLBJKB_00565 0.75 -1.1
577,767 - OHPLBJKB_00565 0.80 +0.2
577,857 + OHPLBJKB_00565 0.88 +0.0
577,874 + OHPLBJKB_00565 0.89 +0.3
577,875 - OHPLBJKB_00565 0.89 +0.0
577,890 + -0.3
577,961 + +1.1
578,001 - +0.1
578,209 - -0.8
578,240 + -0.5
578,240 + +0.5
578,240 + +0.3
578,240 + +0.3
578,240 + -0.5
578,241 - -1.2
578,241 - +1.5
578,241 - +0.2
578,241 - +0.4
578,363 + -0.5
578,363 + -0.1
578,497 + OHPLBJKB_00566 0.13 -1.1
578,570 - OHPLBJKB_00566 0.19 +0.4
578,636 + OHPLBJKB_00566 0.25 +0.4
578,637 - OHPLBJKB_00566 0.25 -0.2
578,637 - OHPLBJKB_00566 0.25 +1.3
578,637 - OHPLBJKB_00566 0.25 +0.0
578,641 + OHPLBJKB_00566 0.26 +0.8
578,641 + OHPLBJKB_00566 0.26 +0.6
578,641 + OHPLBJKB_00566 0.26 -0.1
578,641 + OHPLBJKB_00566 0.26 +0.5
578,641 + OHPLBJKB_00566 0.26 -0.9
578,642 - OHPLBJKB_00566 0.26 +0.4
578,642 - OHPLBJKB_00566 0.26 -0.3
578,642 - OHPLBJKB_00566 0.26 +1.0
578,642 - OHPLBJKB_00566 0.26 -0.4
578,825 + OHPLBJKB_00566 0.42 +0.0
578,825 + OHPLBJKB_00566 0.42 +0.2
578,826 - OHPLBJKB_00566 0.42 -1.4
578,826 - OHPLBJKB_00566 0.42 -0.0
578,826 - OHPLBJKB_00566 0.42 +0.2
578,844 + OHPLBJKB_00566 0.43 -0.1
578,844 + OHPLBJKB_00566 0.43 +0.6
578,844 + OHPLBJKB_00566 0.43 -0.6
578,844 + OHPLBJKB_00566 0.43 -0.7
578,844 + OHPLBJKB_00566 0.43 +0.6
578,844 + OHPLBJKB_00566 0.43 -1.6
578,845 - OHPLBJKB_00566 0.44 -0.3
578,845 - OHPLBJKB_00566 0.44 -0.1
578,845 - OHPLBJKB_00566 0.44 -0.6
578,845 - OHPLBJKB_00566 0.44 -0.3
578,845 - OHPLBJKB_00566 0.44 -0.1
578,931 - OHPLBJKB_00566 0.51 +0.4
578,944 + OHPLBJKB_00566 0.52 +1.2
578,944 + OHPLBJKB_00566 0.52 -0.2
579,003 - OHPLBJKB_00566 0.57 +0.3
579,102 + OHPLBJKB_00566 0.66 -0.5
579,102 + OHPLBJKB_00566 0.66 +0.0
579,103 - OHPLBJKB_00566 0.66 +0.2
579,103 - OHPLBJKB_00566 0.66 +0.3
579,117 + OHPLBJKB_00566 0.68 +0.6
579,170 - OHPLBJKB_00566 0.72 +0.0
579,170 - OHPLBJKB_00566 0.72 -0.9
579,170 - OHPLBJKB_00566 0.72 -0.2
579,193 + OHPLBJKB_00566 0.74 +1.4
579,194 - OHPLBJKB_00566 0.74 -0.1
579,197 - OHPLBJKB_00566 0.75 -0.5
579,293 + OHPLBJKB_00566 0.83 +0.1
579,294 - OHPLBJKB_00566 0.83 -1.2
579,317 + OHPLBJKB_00566 0.85 +1.4
579,318 - OHPLBJKB_00566 0.85 +0.2
579,333 + OHPLBJKB_00566 0.87 +1.4
579,575 - OHPLBJKB_00567 0.22 +1.1
579,575 - OHPLBJKB_00567 0.22 -0.2
579,783 + OHPLBJKB_00567 0.69 -0.9
579,783 + OHPLBJKB_00567 0.69 -0.1
579,783 + OHPLBJKB_00567 0.69 -0.2
579,783 + OHPLBJKB_00567 0.69 -0.3
579,783 + OHPLBJKB_00567 0.69 -0.9
579,784 - OHPLBJKB_00567 0.70 -0.9
579,907 - -0.4
579,918 - -0.7
579,920 + -0.2
579,978 - -1.7
580,089 + OHPLBJKB_00568 0.18 -0.4
580,095 - OHPLBJKB_00568 0.18 -0.7
580,144 + OHPLBJKB_00568 0.24 -0.3
580,144 + OHPLBJKB_00568 0.24 -0.7
580,144 + OHPLBJKB_00568 0.24 -0.5
580,145 - OHPLBJKB_00568 0.24 -2.2
580,145 - OHPLBJKB_00568 0.24 +0.3
580,145 - OHPLBJKB_00568 0.24 -0.2
580,145 - OHPLBJKB_00568 0.24 +0.5
580,145 - OHPLBJKB_00568 0.24 +0.7
580,145 - OHPLBJKB_00568 0.24 -0.1
580,145 - OHPLBJKB_00568 0.24 +1.1
580,145 - OHPLBJKB_00568 0.24 -0.5
580,185 - OHPLBJKB_00568 0.29 -0.6
580,252 + OHPLBJKB_00568 0.36 -0.2
580,252 + OHPLBJKB_00568 0.36 -0.5
580,258 + OHPLBJKB_00568 0.37 -1.3
580,259 - OHPLBJKB_00568 0.37 +0.3
580,259 - OHPLBJKB_00568 0.37 -0.3
580,469 + OHPLBJKB_00568 0.61 -1.2
580,469 + OHPLBJKB_00568 0.61 +0.5
580,470 - OHPLBJKB_00568 0.61 -0.4

Or see this region's nucleotide sequence