Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00102

Experiment: T4 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00100 and OHPLBJKB_00101 are separated by 11 nucleotidesOHPLBJKB_00101 and OHPLBJKB_00102 overlap by 1 nucleotidesOHPLBJKB_00102 and OHPLBJKB_00103 are separated by 229 nucleotides OHPLBJKB_00100: OHPLBJKB_00100 - hypothetical protein, at 107,991 to 108,200 _00100 OHPLBJKB_00101: OHPLBJKB_00101 - Mannitol operon repressor, at 108,212 to 108,799 _00101 OHPLBJKB_00102: OHPLBJKB_00102 - Mannitol-1-phosphate 5-dehydrogenase, at 108,799 to 109,947 _00102 OHPLBJKB_00103: OHPLBJKB_00103 - PTS system mannitol-specific EIICBA component, at 110,177 to 112,090 _00103 Position (kb) 108 109 110Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 107.935 kb on + strandat 107.974 kb on - strandat 107.976 kb on + strandat 107.984 kb on + strandat 107.985 kb on - strandat 107.985 kb on - strandat 107.985 kb on - strandat 108.001 kb on + strandat 108.001 kb on + strandat 108.038 kb on - strand, within OHPLBJKB_00100at 108.136 kb on + strand, within OHPLBJKB_00100at 108.137 kb on - strand, within OHPLBJKB_00100at 108.138 kb on + strand, within OHPLBJKB_00100at 108.138 kb on + strand, within OHPLBJKB_00100at 108.138 kb on + strand, within OHPLBJKB_00100at 108.139 kb on - strand, within OHPLBJKB_00100at 108.142 kb on + strand, within OHPLBJKB_00100at 108.142 kb on + strand, within OHPLBJKB_00100at 108.142 kb on + strand, within OHPLBJKB_00100at 108.143 kb on - strand, within OHPLBJKB_00100at 108.143 kb on - strand, within OHPLBJKB_00100at 108.143 kb on - strand, within OHPLBJKB_00100at 108.143 kb on - strand, within OHPLBJKB_00100at 108.143 kb on - strand, within OHPLBJKB_00100at 108.143 kb on - strand, within OHPLBJKB_00100at 108.157 kb on - strand, within OHPLBJKB_00100at 108.157 kb on - strand, within OHPLBJKB_00100at 108.187 kb on + strandat 108.187 kb on + strandat 108.187 kb on + strandat 108.188 kb on - strandat 108.233 kb on + strandat 108.318 kb on + strand, within OHPLBJKB_00101at 108.319 kb on - strand, within OHPLBJKB_00101at 108.319 kb on - strand, within OHPLBJKB_00101at 108.319 kb on - strand, within OHPLBJKB_00101at 108.440 kb on + strand, within OHPLBJKB_00101at 108.480 kb on + strand, within OHPLBJKB_00101at 108.480 kb on + strand, within OHPLBJKB_00101at 108.511 kb on - strand, within OHPLBJKB_00101at 108.572 kb on + strand, within OHPLBJKB_00101at 108.572 kb on + strand, within OHPLBJKB_00101at 108.573 kb on - strand, within OHPLBJKB_00101at 108.573 kb on - strand, within OHPLBJKB_00101at 108.573 kb on - strand, within OHPLBJKB_00101at 108.573 kb on - strand, within OHPLBJKB_00101at 108.579 kb on + strand, within OHPLBJKB_00101at 108.579 kb on + strand, within OHPLBJKB_00101at 108.579 kb on + strand, within OHPLBJKB_00101at 108.580 kb on - strand, within OHPLBJKB_00101at 108.580 kb on - strand, within OHPLBJKB_00101at 108.580 kb on - strand, within OHPLBJKB_00101at 108.580 kb on - strand, within OHPLBJKB_00101at 108.580 kb on - strand, within OHPLBJKB_00101at 108.580 kb on - strand, within OHPLBJKB_00101at 108.580 kb on - strand, within OHPLBJKB_00101at 108.580 kb on - strand, within OHPLBJKB_00101at 108.608 kb on + strand, within OHPLBJKB_00101at 108.749 kb on - strandat 108.813 kb on + strandat 108.813 kb on + strandat 108.813 kb on + strandat 108.967 kb on - strand, within OHPLBJKB_00102at 108.985 kb on - strand, within OHPLBJKB_00102at 109.070 kb on - strand, within OHPLBJKB_00102at 109.131 kb on - strand, within OHPLBJKB_00102at 109.161 kb on - strand, within OHPLBJKB_00102at 109.175 kb on - strand, within OHPLBJKB_00102at 109.285 kb on - strand, within OHPLBJKB_00102at 109.285 kb on - strand, within OHPLBJKB_00102at 109.285 kb on - strand, within OHPLBJKB_00102at 109.285 kb on - strand, within OHPLBJKB_00102at 109.285 kb on - strand, within OHPLBJKB_00102at 109.443 kb on + strand, within OHPLBJKB_00102at 109.510 kb on + strand, within OHPLBJKB_00102at 109.665 kb on + strand, within OHPLBJKB_00102at 109.777 kb on + strand, within OHPLBJKB_00102at 109.804 kb on + strand, within OHPLBJKB_00102at 109.804 kb on + strand, within OHPLBJKB_00102at 109.805 kb on - strand, within OHPLBJKB_00102at 109.805 kb on - strand, within OHPLBJKB_00102at 109.815 kb on + strand, within OHPLBJKB_00102at 109.815 kb on + strand, within OHPLBJKB_00102at 109.815 kb on + strand, within OHPLBJKB_00102at 109.840 kb on + strandat 109.950 kb on + strandat 109.953 kb on + strandat 110.050 kb on + strandat 110.068 kb on + strandat 110.109 kb on - strandat 110.118 kb on - strandat 110.179 kb on - strandat 110.179 kb on - strandat 110.182 kb on + strandat 110.183 kb on - strandat 110.183 kb on - strandat 110.314 kb on + strandat 110.315 kb on - strandat 110.500 kb on - strand, within OHPLBJKB_00103at 110.500 kb on - strand, within OHPLBJKB_00103at 110.500 kb on - strand, within OHPLBJKB_00103at 110.618 kb on - strand, within OHPLBJKB_00103at 110.658 kb on - strand, within OHPLBJKB_00103at 110.752 kb on + strand, within OHPLBJKB_00103at 110.752 kb on + strand, within OHPLBJKB_00103at 110.752 kb on + strand, within OHPLBJKB_00103at 110.752 kb on + strand, within OHPLBJKB_00103at 110.752 kb on + strand, within OHPLBJKB_00103at 110.752 kb on + strand, within OHPLBJKB_00103at 110.752 kb on + strand, within OHPLBJKB_00103at 110.753 kb on - strand, within OHPLBJKB_00103at 110.753 kb on - strand, within OHPLBJKB_00103at 110.753 kb on - strand, within OHPLBJKB_00103at 110.851 kb on + strand, within OHPLBJKB_00103at 110.852 kb on - strand, within OHPLBJKB_00103at 110.852 kb on - strand, within OHPLBJKB_00103at 110.852 kb on - strand, within OHPLBJKB_00103at 110.894 kb on - strand, within OHPLBJKB_00103

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Per-strain Table

Position Strand Gene LocusTag Fraction T4 MOI1
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107,935 + -0.5
107,974 - +1.0
107,976 + -0.0
107,984 + -0.4
107,985 - +0.2
107,985 - +0.8
107,985 - -0.1
108,001 + -0.7
108,001 + +0.1
108,038 - OHPLBJKB_00100 0.22 -1.8
108,136 + OHPLBJKB_00100 0.69 -0.2
108,137 - OHPLBJKB_00100 0.70 +0.0
108,138 + OHPLBJKB_00100 0.70 -1.5
108,138 + OHPLBJKB_00100 0.70 -1.1
108,138 + OHPLBJKB_00100 0.70 -0.4
108,139 - OHPLBJKB_00100 0.70 +0.3
108,142 + OHPLBJKB_00100 0.72 -0.4
108,142 + OHPLBJKB_00100 0.72 -1.8
108,142 + OHPLBJKB_00100 0.72 +0.0
108,143 - OHPLBJKB_00100 0.72 -0.6
108,143 - OHPLBJKB_00100 0.72 -0.6
108,143 - OHPLBJKB_00100 0.72 +1.3
108,143 - OHPLBJKB_00100 0.72 +0.7
108,143 - OHPLBJKB_00100 0.72 -0.0
108,143 - OHPLBJKB_00100 0.72 +0.1
108,157 - OHPLBJKB_00100 0.79 -1.3
108,157 - OHPLBJKB_00100 0.79 -0.3
108,187 + +0.3
108,187 + +0.9
108,187 + -0.1
108,188 - +0.5
108,233 + -0.8
108,318 + OHPLBJKB_00101 0.18 -0.8
108,319 - OHPLBJKB_00101 0.18 +0.1
108,319 - OHPLBJKB_00101 0.18 -0.2
108,319 - OHPLBJKB_00101 0.18 +1.0
108,440 + OHPLBJKB_00101 0.39 +1.0
108,480 + OHPLBJKB_00101 0.46 -1.0
108,480 + OHPLBJKB_00101 0.46 +0.2
108,511 - OHPLBJKB_00101 0.51 -0.8
108,572 + OHPLBJKB_00101 0.61 -0.3
108,572 + OHPLBJKB_00101 0.61 +0.2
108,573 - OHPLBJKB_00101 0.61 -0.1
108,573 - OHPLBJKB_00101 0.61 -1.3
108,573 - OHPLBJKB_00101 0.61 -0.4
108,573 - OHPLBJKB_00101 0.61 -0.7
108,579 + OHPLBJKB_00101 0.62 +0.8
108,579 + OHPLBJKB_00101 0.62 -1.7
108,579 + OHPLBJKB_00101 0.62 -1.0
108,580 - OHPLBJKB_00101 0.63 +0.2
108,580 - OHPLBJKB_00101 0.63 +1.3
108,580 - OHPLBJKB_00101 0.63 +1.0
108,580 - OHPLBJKB_00101 0.63 -0.0
108,580 - OHPLBJKB_00101 0.63 +0.2
108,580 - OHPLBJKB_00101 0.63 +0.3
108,580 - OHPLBJKB_00101 0.63 -0.5
108,580 - OHPLBJKB_00101 0.63 +0.0
108,608 + OHPLBJKB_00101 0.67 -0.1
108,749 - +0.5
108,813 + -1.0
108,813 + -0.5
108,813 + +0.9
108,967 - OHPLBJKB_00102 0.15 -0.5
108,985 - OHPLBJKB_00102 0.16 -0.5
109,070 - OHPLBJKB_00102 0.24 -1.2
109,131 - OHPLBJKB_00102 0.29 -0.3
109,161 - OHPLBJKB_00102 0.32 -0.3
109,175 - OHPLBJKB_00102 0.33 +1.3
109,285 - OHPLBJKB_00102 0.42 -1.0
109,285 - OHPLBJKB_00102 0.42 -2.0
109,285 - OHPLBJKB_00102 0.42 +1.3
109,285 - OHPLBJKB_00102 0.42 +2.0
109,285 - OHPLBJKB_00102 0.42 -1.1
109,443 + OHPLBJKB_00102 0.56 +0.0
109,510 + OHPLBJKB_00102 0.62 -0.5
109,665 + OHPLBJKB_00102 0.75 -0.5
109,777 + OHPLBJKB_00102 0.85 -0.5
109,804 + OHPLBJKB_00102 0.87 -1.7
109,804 + OHPLBJKB_00102 0.87 -1.3
109,805 - OHPLBJKB_00102 0.88 +0.2
109,805 - OHPLBJKB_00102 0.88 -0.5
109,815 + OHPLBJKB_00102 0.88 -1.1
109,815 + OHPLBJKB_00102 0.88 +1.0
109,815 + OHPLBJKB_00102 0.88 -0.9
109,840 + +0.3
109,950 + -0.5
109,953 + -0.5
110,050 + -3.0
110,068 + +0.5
110,109 - +0.9
110,118 - +0.3
110,179 - -0.8
110,179 - +0.3
110,182 + -0.1
110,183 - -1.3
110,183 - +0.2
110,314 + +0.3
110,315 - -0.1
110,500 - OHPLBJKB_00103 0.17 +1.0
110,500 - OHPLBJKB_00103 0.17 +0.9
110,500 - OHPLBJKB_00103 0.17 +0.8
110,618 - OHPLBJKB_00103 0.23 -0.4
110,658 - OHPLBJKB_00103 0.25 +1.3
110,752 + OHPLBJKB_00103 0.30 +1.6
110,752 + OHPLBJKB_00103 0.30 +0.4
110,752 + OHPLBJKB_00103 0.30 -0.4
110,752 + OHPLBJKB_00103 0.30 -0.3
110,752 + OHPLBJKB_00103 0.30 +0.2
110,752 + OHPLBJKB_00103 0.30 -0.8
110,752 + OHPLBJKB_00103 0.30 -1.0
110,753 - OHPLBJKB_00103 0.30 +0.1
110,753 - OHPLBJKB_00103 0.30 -0.0
110,753 - OHPLBJKB_00103 0.30 +0.2
110,851 + OHPLBJKB_00103 0.35 +0.3
110,852 - OHPLBJKB_00103 0.35 -0.5
110,852 - OHPLBJKB_00103 0.35 -0.4
110,852 - OHPLBJKB_00103 0.35 +1.0
110,894 - OHPLBJKB_00103 0.37 -1.3

Or see this region's nucleotide sequence