Experiment: T4 MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00077 and OHPLBJKB_00078 are separated by 45 nucleotides OHPLBJKB_00078 and OHPLBJKB_00079 are separated by 69 nucleotides
OHPLBJKB_00077: OHPLBJKB_00077 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 80,044 to 81,027
_00077
OHPLBJKB_00078: OHPLBJKB_00078 - O-antigen ligase, at 81,073 to 82,326
_00078
OHPLBJKB_00079: OHPLBJKB_00079 - Lipopolysaccharide heptosyltransferase 1, at 82,396 to 83,367
_00079
Position (kb)
81
82
83 Strain fitness (log2 ratio)
-1
0
1
2
3 at 80.307 kb on + strand, within OHPLBJKB_00077 at 80.317 kb on - strand, within OHPLBJKB_00077 at 80.344 kb on - strand, within OHPLBJKB_00077 at 80.363 kb on - strand, within OHPLBJKB_00077 at 80.440 kb on + strand, within OHPLBJKB_00077 at 80.450 kb on + strand, within OHPLBJKB_00077 at 80.463 kb on + strand, within OHPLBJKB_00077 at 80.516 kb on + strand, within OHPLBJKB_00077 at 80.635 kb on + strand, within OHPLBJKB_00077 at 80.651 kb on - strand, within OHPLBJKB_00077 at 80.766 kb on - strand, within OHPLBJKB_00077 at 81.320 kb on - strand, within OHPLBJKB_00078 at 81.340 kb on + strand, within OHPLBJKB_00078 at 81.523 kb on + strand, within OHPLBJKB_00078 at 81.651 kb on - strand, within OHPLBJKB_00078 at 81.654 kb on + strand, within OHPLBJKB_00078 at 81.693 kb on - strand, within OHPLBJKB_00078 at 81.824 kb on + strand, within OHPLBJKB_00078 at 81.867 kb on - strand, within OHPLBJKB_00078 at 81.935 kb on - strand, within OHPLBJKB_00078 at 82.050 kb on - strand, within OHPLBJKB_00078 at 82.080 kb on + strand, within OHPLBJKB_00078 at 82.113 kb on - strand, within OHPLBJKB_00078 at 82.145 kb on + strand, within OHPLBJKB_00078 at 82.145 kb on + strand, within OHPLBJKB_00078 at 82.176 kb on + strand, within OHPLBJKB_00078 at 82.205 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction T4 MOI1 remove 80,307 + OHPLBJKB_00077 0.27 +1.0 80,317 - OHPLBJKB_00077 0.28 +0.7 80,344 - OHPLBJKB_00077 0.30 -1.7 80,363 - OHPLBJKB_00077 0.32 -0.5 80,440 + OHPLBJKB_00077 0.40 +3.6 80,450 + OHPLBJKB_00077 0.41 +0.5 80,463 + OHPLBJKB_00077 0.43 -0.5 80,516 + OHPLBJKB_00077 0.48 -0.8 80,635 + OHPLBJKB_00077 0.60 -1.5 80,651 - OHPLBJKB_00077 0.62 -1.3 80,766 - OHPLBJKB_00077 0.73 +2.7 81,320 - OHPLBJKB_00078 0.20 +0.5 81,340 + OHPLBJKB_00078 0.21 -0.5 81,523 + OHPLBJKB_00078 0.36 +0.7 81,651 - OHPLBJKB_00078 0.46 +2.0 81,654 + OHPLBJKB_00078 0.46 +1.0 81,693 - OHPLBJKB_00078 0.49 +0.7 81,824 + OHPLBJKB_00078 0.60 -0.5 81,867 - OHPLBJKB_00078 0.63 -1.3 81,935 - OHPLBJKB_00078 0.69 +0.5 82,050 - OHPLBJKB_00078 0.78 +0.5 82,080 + OHPLBJKB_00078 0.80 +1.0 82,113 - OHPLBJKB_00078 0.83 +1.6 82,145 + OHPLBJKB_00078 0.85 -1.0 82,145 + OHPLBJKB_00078 0.85 +0.0 82,176 + OHPLBJKB_00078 0.88 -0.5 82,205 + +0.6
Or see this region's nucleotide sequence