Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00078

Experiment: T4 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00077 and OHPLBJKB_00078 are separated by 45 nucleotidesOHPLBJKB_00078 and OHPLBJKB_00079 are separated by 69 nucleotides OHPLBJKB_00077: OHPLBJKB_00077 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 80,044 to 81,027 _00077 OHPLBJKB_00078: OHPLBJKB_00078 - O-antigen ligase, at 81,073 to 82,326 _00078 OHPLBJKB_00079: OHPLBJKB_00079 - Lipopolysaccharide heptosyltransferase 1, at 82,396 to 83,367 _00079 Position (kb) 81 82 83Strain fitness (log2 ratio) -1 0 1 2 3at 80.307 kb on + strand, within OHPLBJKB_00077at 80.317 kb on - strand, within OHPLBJKB_00077at 80.344 kb on - strand, within OHPLBJKB_00077at 80.363 kb on - strand, within OHPLBJKB_00077at 80.440 kb on + strand, within OHPLBJKB_00077at 80.450 kb on + strand, within OHPLBJKB_00077at 80.463 kb on + strand, within OHPLBJKB_00077at 80.516 kb on + strand, within OHPLBJKB_00077at 80.635 kb on + strand, within OHPLBJKB_00077at 80.651 kb on - strand, within OHPLBJKB_00077at 80.766 kb on - strand, within OHPLBJKB_00077at 81.320 kb on - strand, within OHPLBJKB_00078at 81.340 kb on + strand, within OHPLBJKB_00078at 81.523 kb on + strand, within OHPLBJKB_00078at 81.651 kb on - strand, within OHPLBJKB_00078at 81.654 kb on + strand, within OHPLBJKB_00078at 81.693 kb on - strand, within OHPLBJKB_00078at 81.824 kb on + strand, within OHPLBJKB_00078at 81.867 kb on - strand, within OHPLBJKB_00078at 81.935 kb on - strand, within OHPLBJKB_00078at 82.050 kb on - strand, within OHPLBJKB_00078at 82.080 kb on + strand, within OHPLBJKB_00078at 82.113 kb on - strand, within OHPLBJKB_00078at 82.145 kb on + strand, within OHPLBJKB_00078at 82.145 kb on + strand, within OHPLBJKB_00078at 82.176 kb on + strand, within OHPLBJKB_00078at 82.205 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T4 MOI1
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80,307 + OHPLBJKB_00077 0.27 +1.0
80,317 - OHPLBJKB_00077 0.28 +0.7
80,344 - OHPLBJKB_00077 0.30 -1.7
80,363 - OHPLBJKB_00077 0.32 -0.5
80,440 + OHPLBJKB_00077 0.40 +3.6
80,450 + OHPLBJKB_00077 0.41 +0.5
80,463 + OHPLBJKB_00077 0.43 -0.5
80,516 + OHPLBJKB_00077 0.48 -0.8
80,635 + OHPLBJKB_00077 0.60 -1.5
80,651 - OHPLBJKB_00077 0.62 -1.3
80,766 - OHPLBJKB_00077 0.73 +2.7
81,320 - OHPLBJKB_00078 0.20 +0.5
81,340 + OHPLBJKB_00078 0.21 -0.5
81,523 + OHPLBJKB_00078 0.36 +0.7
81,651 - OHPLBJKB_00078 0.46 +2.0
81,654 + OHPLBJKB_00078 0.46 +1.0
81,693 - OHPLBJKB_00078 0.49 +0.7
81,824 + OHPLBJKB_00078 0.60 -0.5
81,867 - OHPLBJKB_00078 0.63 -1.3
81,935 - OHPLBJKB_00078 0.69 +0.5
82,050 - OHPLBJKB_00078 0.78 +0.5
82,080 + OHPLBJKB_00078 0.80 +1.0
82,113 - OHPLBJKB_00078 0.83 +1.6
82,145 + OHPLBJKB_00078 0.85 -1.0
82,145 + OHPLBJKB_00078 0.85 +0.0
82,176 + OHPLBJKB_00078 0.88 -0.5
82,205 + +0.6

Or see this region's nucleotide sequence