Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS20960

Experiment: b-Glucan from Beet (1,2-b-Glucan) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	b-Glucan from Beet (1,2-b-Glucan) (C)
5,159,109	+		ABI39_RS20955	0.44	+0.8
5,159,110	-		ABI39_RS20955	0.44	+0.5
5,159,226	+		ABI39_RS20955	0.55	-0.2
5,159,267	-		ABI39_RS20955	0.59	+0.4
5,159,293	-		ABI39_RS20955	0.61	-0.6
5,159,364	+		ABI39_RS20955	0.68	-0.6
5,159,488	-		ABI39_RS20955	0.79	-0.2
5,159,500	-		ABI39_RS20955	0.80	+0.4
5,159,674	+				+1.5
5,159,691	+				+0.8
5,159,702	+				+0.1
5,159,804	+				+0.2
5,159,805	-				-0.5
5,159,821	+				+0.5
5,159,828	+				-0.5
5,159,830	+				+1.1
5,159,877	+				+0.6
5,159,880	+				-0.5
5,159,931	+				+0.2
5,159,936	-				+0.7
5,159,936	-				+0.1
5,159,936	-				-0.6
5,159,951	+				+0.8
5,160,018	+				+0.6
5,160,033	+				-1.8
5,160,048	+				-0.0
5,160,051	+				+1.1
5,160,051	+				-0.1
5,160,051	+				-0.3
5,160,054	-				-0.0
5,160,055	+				+0.4
5,160,084	-				-0.4
5,160,258	+		ABI39_RS20960	0.17	-0.3
5,160,335	+		ABI39_RS20960	0.25	-0.1
5,160,350	-		ABI39_RS20960	0.27	-1.1
5,160,387	+		ABI39_RS20960	0.31	+0.1
5,160,387	+		ABI39_RS20960	0.31	-1.6
5,160,388	-		ABI39_RS20960	0.31	+0.1
5,160,408	+		ABI39_RS20960	0.33	+0.1
5,160,432	+		ABI39_RS20960	0.36	+1.2
5,160,539	-		ABI39_RS20960	0.47	-0.1
5,160,539	-		ABI39_RS20960	0.47	-0.9
5,160,546	-		ABI39_RS20960	0.47	+0.1
5,160,627	+		ABI39_RS20960	0.56	-0.6
5,160,640	-		ABI39_RS20960	0.57	+0.5
5,160,676	-		ABI39_RS20960	0.61	-0.8
5,160,777	+		ABI39_RS20960	0.71	-0.1
5,160,807	+		ABI39_RS20960	0.75	-0.6
5,160,870	+		ABI39_RS20960	0.81	-0.9
5,160,870	+		ABI39_RS20960	0.81	-0.6
5,160,871	-		ABI39_RS20960	0.81	+0.1
5,160,896	+		ABI39_RS20960	0.84	-0.8
5,160,952	-		ABI39_RS20960	0.90	-0.2
5,160,965	-				+0.5
5,161,006	+				-2.0
5,161,044	-				+0.7
5,161,044	-				-0.7
5,161,088	+				+0.0
5,161,177	+				-1.4
5,161,181	-				-0.9
5,161,181	-				-1.2
5,161,181	-				-0.1
5,161,187	+				-1.6
5,161,187	+				-0.7
5,161,189	+				-2.4
5,161,189	+				-2.3
5,161,191	+				-0.9
5,161,407	+		ABI39_RS20965	0.46	-1.3
5,161,407	+		ABI39_RS20965	0.46	-2.2
5,161,500	+		ABI39_RS20965	0.65	+1.3
5,161,719	-				-0.6
5,161,721	-				+1.1
5,161,904	+				-0.2
5,161,948	-		ABI39_RS20970	0.32	+0.8
5,162,004	-		ABI39_RS20970	0.60	+0.1