Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS00175

Experiment: b-Glucan from Beet (1,2-b-Glucan) (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABI39_RS00170 and ABI39_RS00175 are separated by 14 nucleotidesABI39_RS00175 and ABI39_RS00180 are separated by 41 nucleotides ABI39_RS00170: ABI39_RS00170 - RagB/SusD family nutrient uptake outer membrane protein, at 46,832 to 48,766 _RS00170 ABI39_RS00175: ABI39_RS00175 - TonB-dependent receptor, at 48,781 to 51,852 _RS00175 ABI39_RS00180: ABI39_RS00180 - glycoside hydrolase family 43 protein, at 51,894 to 53,630 _RS00180 Position (kb) 48 49 50 51 52Strain fitness (log2 ratio) -1 0 1at 47.878 kb on - strand, within ABI39_RS00170at 47.986 kb on - strand, within ABI39_RS00170at 48.582 kb on + strandat 48.589 kb on - strandat 48.603 kb on + strandat 48.643 kb on + strandat 48.652 kb on + strandat 48.660 kb on + strandat 48.810 kb on - strandat 48.862 kb on - strandat 48.862 kb on - strandat 49.402 kb on - strand, within ABI39_RS00175at 49.420 kb on - strand, within ABI39_RS00175at 49.505 kb on + strand, within ABI39_RS00175at 49.707 kb on - strand, within ABI39_RS00175at 49.707 kb on - strand, within ABI39_RS00175at 49.707 kb on - strand, within ABI39_RS00175at 49.714 kb on + strand, within ABI39_RS00175at 49.786 kb on - strand, within ABI39_RS00175at 49.837 kb on - strand, within ABI39_RS00175at 50.011 kb on + strand, within ABI39_RS00175at 50.126 kb on - strand, within ABI39_RS00175at 50.142 kb on + strand, within ABI39_RS00175at 50.143 kb on - strand, within ABI39_RS00175at 50.144 kb on + strand, within ABI39_RS00175at 50.156 kb on + strand, within ABI39_RS00175at 50.334 kb on - strand, within ABI39_RS00175at 50.338 kb on - strand, within ABI39_RS00175at 50.371 kb on - strand, within ABI39_RS00175at 50.493 kb on + strand, within ABI39_RS00175at 50.496 kb on + strand, within ABI39_RS00175at 50.706 kb on + strand, within ABI39_RS00175at 50.722 kb on - strand, within ABI39_RS00175at 50.745 kb on - strand, within ABI39_RS00175at 50.778 kb on - strand, within ABI39_RS00175at 50.778 kb on - strand, within ABI39_RS00175at 50.959 kb on + strand, within ABI39_RS00175at 50.960 kb on - strand, within ABI39_RS00175at 50.960 kb on - strand, within ABI39_RS00175at 51.166 kb on - strand, within ABI39_RS00175at 51.204 kb on - strand, within ABI39_RS00175at 51.426 kb on - strand, within ABI39_RS00175at 51.429 kb on + strand, within ABI39_RS00175at 51.481 kb on - strand, within ABI39_RS00175at 51.565 kb on - strandat 51.918 kb on + strandat 52.245 kb on - strand, within ABI39_RS00180at 52.265 kb on + strand, within ABI39_RS00180at 52.287 kb on + strand, within ABI39_RS00180at 52.288 kb on - strand, within ABI39_RS00180at 52.569 kb on - strand, within ABI39_RS00180at 52.728 kb on - strand, within ABI39_RS00180at 52.847 kb on + strand, within ABI39_RS00180

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction b-Glucan from Beet (1,2-b-Glucan) (C)
remove
47,878 - ABI39_RS00170 0.54 -0.4
47,986 - ABI39_RS00170 0.60 -0.4
48,582 + +1.0
48,589 - -0.2
48,603 + -0.3
48,643 + -0.8
48,652 + -0.4
48,660 + -0.2
48,810 - +0.5
48,862 - +0.0
48,862 - +0.0
49,402 - ABI39_RS00175 0.20 -0.5
49,420 - ABI39_RS00175 0.21 +1.2
49,505 + ABI39_RS00175 0.24 -0.6
49,707 - ABI39_RS00175 0.30 -0.1
49,707 - ABI39_RS00175 0.30 +0.0
49,707 - ABI39_RS00175 0.30 -0.1
49,714 + ABI39_RS00175 0.30 +1.4
49,786 - ABI39_RS00175 0.33 +1.3
49,837 - ABI39_RS00175 0.34 +0.2
50,011 + ABI39_RS00175 0.40 +0.3
50,126 - ABI39_RS00175 0.44 -0.7
50,142 + ABI39_RS00175 0.44 +0.6
50,143 - ABI39_RS00175 0.44 -0.1
50,144 + ABI39_RS00175 0.44 +1.4
50,156 + ABI39_RS00175 0.45 +0.0
50,334 - ABI39_RS00175 0.51 +1.0
50,338 - ABI39_RS00175 0.51 +0.1
50,371 - ABI39_RS00175 0.52 -0.8
50,493 + ABI39_RS00175 0.56 +1.0
50,496 + ABI39_RS00175 0.56 +1.0
50,706 + ABI39_RS00175 0.63 +0.2
50,722 - ABI39_RS00175 0.63 +0.4
50,745 - ABI39_RS00175 0.64 +0.3
50,778 - ABI39_RS00175 0.65 -0.8
50,778 - ABI39_RS00175 0.65 -0.2
50,959 + ABI39_RS00175 0.71 +0.2
50,960 - ABI39_RS00175 0.71 -0.3
50,960 - ABI39_RS00175 0.71 +0.5
51,166 - ABI39_RS00175 0.78 -0.5
51,204 - ABI39_RS00175 0.79 -0.2
51,426 - ABI39_RS00175 0.86 +0.0
51,429 + ABI39_RS00175 0.86 -0.3
51,481 - ABI39_RS00175 0.88 -0.3
51,565 - +0.4
51,918 + +0.5
52,245 - ABI39_RS00180 0.20 +1.3
52,265 + ABI39_RS00180 0.21 +0.8
52,287 + ABI39_RS00180 0.23 +1.2
52,288 - ABI39_RS00180 0.23 -0.8
52,569 - ABI39_RS00180 0.39 -0.0
52,728 - ABI39_RS00180 0.48 -0.0
52,847 + ABI39_RS00180 0.55 +0.4

Or see this region's nucleotide sequence