Experiment: Amylopectin from Potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02675 and ABI39_RS02680 are separated by 217 nucleotides ABI39_RS02680 and ABI39_RS02685 are separated by 144 nucleotides
ABI39_RS02675: ABI39_RS02675 - response regulator, at 774,075 to 778,109
_RS02675
ABI39_RS02680: ABI39_RS02680 - DUF3810 domain-containing protein, at 778,327 to 779,367
_RS02680
ABI39_RS02685: ABI39_RS02685 - DUF2264 domain-containing protein, at 779,512 to 781,827
_RS02685
Position (kb) 778
779
780 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 777.424 kb on + strand, within ABI39_RS02675 at 777.542 kb on - strand, within ABI39_RS02675 at 777.601 kb on + strand, within ABI39_RS02675 at 777.601 kb on + strand, within ABI39_RS02675 at 777.647 kb on + strand, within ABI39_RS02675 at 777.924 kb on - strand at 777.995 kb on + strand at 777.996 kb on - strand at 778.069 kb on - strand at 778.161 kb on + strand at 778.244 kb on - strand at 778.247 kb on - strand at 778.283 kb on + strand at 778.452 kb on + strand, within ABI39_RS02680 at 778.452 kb on + strand, within ABI39_RS02680 at 778.454 kb on + strand, within ABI39_RS02680 at 778.469 kb on + strand, within ABI39_RS02680 at 778.470 kb on - strand, within ABI39_RS02680 at 778.473 kb on + strand, within ABI39_RS02680 at 778.482 kb on - strand, within ABI39_RS02680 at 778.602 kb on - strand, within ABI39_RS02680 at 778.668 kb on + strand, within ABI39_RS02680 at 778.703 kb on + strand, within ABI39_RS02680 at 778.708 kb on - strand, within ABI39_RS02680 at 778.861 kb on - strand, within ABI39_RS02680 at 778.950 kb on + strand, within ABI39_RS02680 at 778.951 kb on - strand, within ABI39_RS02680 at 778.959 kb on - strand, within ABI39_RS02680 at 779.076 kb on - strand, within ABI39_RS02680 at 779.221 kb on + strand, within ABI39_RS02680 at 779.221 kb on + strand, within ABI39_RS02680 at 779.253 kb on - strand, within ABI39_RS02680 at 779.329 kb on + strand at 779.333 kb on - strand at 779.333 kb on - strand at 779.334 kb on + strand at 779.334 kb on + strand at 779.334 kb on + strand at 779.334 kb on + strand at 779.458 kb on + strand at 779.536 kb on - strand at 779.732 kb on - strand at 779.732 kb on - strand at 779.875 kb on - strand, within ABI39_RS02685 at 779.920 kb on - strand, within ABI39_RS02685 at 780.079 kb on - strand, within ABI39_RS02685 at 780.301 kb on - strand, within ABI39_RS02685
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato (C) remove 777,424 + ABI39_RS02675 0.83 +0.5 777,542 - ABI39_RS02675 0.86 +0.2 777,601 + ABI39_RS02675 0.87 +0.4 777,601 + ABI39_RS02675 0.87 +0.7 777,647 + ABI39_RS02675 0.89 -0.3 777,924 - -0.7 777,995 + -0.2 777,996 - -0.4 778,069 - +0.6 778,161 + -0.4 778,244 - -0.1 778,247 - -0.0 778,283 + +0.1 778,452 + ABI39_RS02680 0.12 +0.4 778,452 + ABI39_RS02680 0.12 +0.3 778,454 + ABI39_RS02680 0.12 -0.0 778,469 + ABI39_RS02680 0.14 -0.3 778,470 - ABI39_RS02680 0.14 +0.0 778,473 + ABI39_RS02680 0.14 -0.9 778,482 - ABI39_RS02680 0.15 -0.9 778,602 - ABI39_RS02680 0.26 +0.9 778,668 + ABI39_RS02680 0.33 -5.0 778,703 + ABI39_RS02680 0.36 +0.4 778,708 - ABI39_RS02680 0.37 +0.1 778,861 - ABI39_RS02680 0.51 +0.2 778,950 + ABI39_RS02680 0.60 -0.9 778,951 - ABI39_RS02680 0.60 -0.9 778,959 - ABI39_RS02680 0.61 -0.7 779,076 - ABI39_RS02680 0.72 -0.3 779,221 + ABI39_RS02680 0.86 +0.3 779,221 + ABI39_RS02680 0.86 -0.1 779,253 - ABI39_RS02680 0.89 +0.4 779,329 + +0.4 779,333 - +1.2 779,333 - +2.3 779,334 + +0.4 779,334 + +0.8 779,334 + -0.3 779,334 + +0.9 779,458 + +0.0 779,536 - -0.6 779,732 - -0.2 779,732 - +0.2 779,875 - ABI39_RS02685 0.16 -0.6 779,920 - ABI39_RS02685 0.18 +0.2 780,079 - ABI39_RS02685 0.24 -0.5 780,301 - ABI39_RS02685 0.34 -0.1
Or see this region's nucleotide sequence