Experiment: Amylopectin from Potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00465 and ABI39_RS00470 are separated by 78 nucleotides ABI39_RS00470 and ABI39_RS00475 are separated by 950 nucleotides
ABI39_RS00465: ABI39_RS00465 - carbon starvation protein A, at 131,511 to 132,941
_RS00465
ABI39_RS00470: ABI39_RS00470 - family 10 glycosylhydrolase, at 133,020 to 134,699
_RS00470
ABI39_RS00475: ABI39_RS00475 - phosphoribosylformylglycinamidine cyclo-ligase, at 135,650 to 136,819
_RS00475
Position (kb) 133
134
135 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 132.050 kb on + strand, within ABI39_RS00465 at 132.279 kb on - strand, within ABI39_RS00465 at 132.281 kb on + strand, within ABI39_RS00465 at 132.282 kb on - strand, within ABI39_RS00465 at 132.354 kb on - strand, within ABI39_RS00465 at 132.360 kb on + strand, within ABI39_RS00465 at 132.420 kb on - strand, within ABI39_RS00465 at 132.428 kb on + strand, within ABI39_RS00465 at 132.564 kb on + strand, within ABI39_RS00465 at 132.565 kb on - strand, within ABI39_RS00465 at 132.730 kb on - strand, within ABI39_RS00465 at 132.731 kb on + strand, within ABI39_RS00465 at 132.732 kb on - strand, within ABI39_RS00465 at 132.750 kb on + strand, within ABI39_RS00465 at 132.759 kb on + strand, within ABI39_RS00465 at 132.761 kb on + strand, within ABI39_RS00465 at 132.926 kb on + strand at 132.988 kb on + strand at 133.037 kb on - strand at 133.085 kb on + strand at 133.153 kb on + strand at 133.189 kb on + strand, within ABI39_RS00470 at 133.198 kb on + strand, within ABI39_RS00470 at 133.198 kb on + strand, within ABI39_RS00470 at 133.270 kb on - strand, within ABI39_RS00470 at 133.270 kb on - strand, within ABI39_RS00470 at 133.311 kb on - strand, within ABI39_RS00470 at 133.549 kb on + strand, within ABI39_RS00470 at 133.597 kb on - strand, within ABI39_RS00470 at 133.644 kb on + strand, within ABI39_RS00470 at 133.704 kb on - strand, within ABI39_RS00470 at 133.737 kb on - strand, within ABI39_RS00470 at 134.309 kb on + strand, within ABI39_RS00470 at 134.381 kb on + strand, within ABI39_RS00470 at 134.500 kb on + strand, within ABI39_RS00470 at 134.533 kb on + strand at 134.558 kb on - strand at 134.561 kb on + strand at 134.644 kb on + strand at 134.645 kb on - strand at 134.646 kb on + strand at 134.648 kb on + strand at 134.649 kb on - strand at 134.733 kb on - strand at 134.796 kb on - strand at 134.991 kb on - strand at 135.002 kb on - strand at 135.159 kb on + strand at 135.335 kb on + strand at 135.374 kb on - strand at 135.450 kb on + strand at 135.555 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato (C) remove 132,050 + ABI39_RS00465 0.38 -0.0 132,279 - ABI39_RS00465 0.54 -0.1 132,281 + ABI39_RS00465 0.54 +0.5 132,282 - ABI39_RS00465 0.54 +0.2 132,354 - ABI39_RS00465 0.59 -1.8 132,360 + ABI39_RS00465 0.59 -0.8 132,420 - ABI39_RS00465 0.64 -0.3 132,428 + ABI39_RS00465 0.64 +0.1 132,564 + ABI39_RS00465 0.74 +0.1 132,565 - ABI39_RS00465 0.74 -0.4 132,730 - ABI39_RS00465 0.85 +0.6 132,731 + ABI39_RS00465 0.85 -0.6 132,732 - ABI39_RS00465 0.85 +0.4 132,750 + ABI39_RS00465 0.87 -0.6 132,759 + ABI39_RS00465 0.87 +1.9 132,761 + ABI39_RS00465 0.87 +0.9 132,926 + -2.3 132,988 + -0.7 133,037 - +0.1 133,085 + +0.4 133,153 + -1.8 133,189 + ABI39_RS00470 0.10 -0.2 133,198 + ABI39_RS00470 0.11 -0.4 133,198 + ABI39_RS00470 0.11 -0.4 133,270 - ABI39_RS00470 0.15 -0.1 133,270 - ABI39_RS00470 0.15 -2.1 133,311 - ABI39_RS00470 0.17 -0.4 133,549 + ABI39_RS00470 0.31 -0.7 133,597 - ABI39_RS00470 0.34 -0.7 133,644 + ABI39_RS00470 0.37 -4.4 133,704 - ABI39_RS00470 0.41 -1.1 133,737 - ABI39_RS00470 0.43 -0.1 134,309 + ABI39_RS00470 0.77 -1.0 134,381 + ABI39_RS00470 0.81 -0.3 134,500 + ABI39_RS00470 0.88 +0.3 134,533 + -0.0 134,558 - +0.4 134,561 + -0.5 134,644 + -1.0 134,645 - -0.8 134,646 + +1.1 134,648 + -0.2 134,649 - -0.1 134,733 - +0.0 134,796 - +0.3 134,991 - -1.1 135,002 - +1.6 135,159 + -0.5 135,335 + -0.0 135,374 - +0.5 135,450 + -1.0 135,555 + -2.1
Or see this region's nucleotide sequence