Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_14540

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_14530 and OKGIIK_14535 overlap by 26 nucleotidesOKGIIK_14535 and OKGIIK_14540 are separated by 8 nucleotidesOKGIIK_14540 and OKGIIK_14545 are separated by 260 nucleotidesOKGIIK_14545 and OKGIIK_14550 overlap by 1 nucleotides OKGIIK_14530: OKGIIK_14530 - DUF2063 domain-containing protein, at 3,176,890 to 3,177,675 _14530 OKGIIK_14535: OKGIIK_14535 - UPF0276 protein E6H59_07615, at 3,177,650 to 3,178,516 _14535 OKGIIK_14540: OKGIIK_14540 - DUF2282 domain-containing protein, at 3,178,525 to 3,178,821 _14540 OKGIIK_14545: OKGIIK_14545 - hypothetical protein, at 3,179,082 to 3,179,768 _14545 OKGIIK_14550: OKGIIK_14550 - hypothetical protein, at 3,179,768 to 3,180,043 _14550 Position (kb) 3178 3179Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3177.548 kb on + strand, within OKGIIK_14530at 3177.549 kb on - strand, within OKGIIK_14530at 3177.552 kb on + strand, within OKGIIK_14530at 3177.552 kb on + strand, within OKGIIK_14530at 3177.552 kb on + strand, within OKGIIK_14530at 3177.552 kb on + strand, within OKGIIK_14530at 3177.552 kb on + strand, within OKGIIK_14530at 3177.552 kb on + strand, within OKGIIK_14530at 3177.553 kb on - strand, within OKGIIK_14530at 3177.553 kb on - strand, within OKGIIK_14530at 3177.553 kb on - strand, within OKGIIK_14530at 3177.553 kb on - strand, within OKGIIK_14530at 3177.553 kb on - strand, within OKGIIK_14530at 3177.553 kb on - strand, within OKGIIK_14530at 3177.553 kb on - strand, within OKGIIK_14530at 3177.553 kb on - strand, within OKGIIK_14530at 3177.754 kb on + strand, within OKGIIK_14535at 3177.754 kb on + strand, within OKGIIK_14535at 3177.754 kb on + strand, within OKGIIK_14535at 3177.754 kb on + strand, within OKGIIK_14535at 3177.754 kb on + strand, within OKGIIK_14535at 3177.754 kb on + strand, within OKGIIK_14535at 3177.754 kb on + strand, within OKGIIK_14535at 3177.754 kb on + strand, within OKGIIK_14535at 3177.754 kb on + strand, within OKGIIK_14535at 3177.754 kb on + strand, within OKGIIK_14535at 3177.754 kb on + strand, within OKGIIK_14535at 3177.754 kb on + strand, within OKGIIK_14535at 3177.755 kb on - strand, within OKGIIK_14535at 3177.755 kb on - strand, within OKGIIK_14535at 3177.755 kb on - strand, within OKGIIK_14535at 3177.755 kb on - strand, within OKGIIK_14535at 3177.755 kb on - strand, within OKGIIK_14535at 3177.755 kb on - strand, within OKGIIK_14535at 3177.755 kb on - strand, within OKGIIK_14535at 3177.755 kb on - strand, within OKGIIK_14535at 3177.755 kb on - strand, within OKGIIK_14535at 3177.755 kb on - strand, within OKGIIK_14535at 3177.755 kb on - strand, within OKGIIK_14535at 3177.755 kb on - strand, within OKGIIK_14535at 3177.755 kb on - strand, within OKGIIK_14535at 3177.824 kb on - strand, within OKGIIK_14535at 3177.884 kb on + strand, within OKGIIK_14535at 3177.884 kb on + strand, within OKGIIK_14535at 3177.884 kb on + strand, within OKGIIK_14535at 3177.884 kb on + strand, within OKGIIK_14535at 3177.884 kb on + strand, within OKGIIK_14535at 3177.885 kb on - strand, within OKGIIK_14535at 3177.885 kb on - strand, within OKGIIK_14535at 3177.885 kb on - strand, within OKGIIK_14535at 3177.885 kb on - strand, within OKGIIK_14535at 3177.885 kb on - strand, within OKGIIK_14535at 3177.885 kb on - strand, within OKGIIK_14535at 3177.885 kb on - strand, within OKGIIK_14535at 3177.885 kb on - strand, within OKGIIK_14535at 3177.921 kb on + strand, within OKGIIK_14535at 3177.921 kb on + strand, within OKGIIK_14535at 3177.921 kb on + strand, within OKGIIK_14535at 3177.921 kb on + strand, within OKGIIK_14535at 3177.921 kb on + strand, within OKGIIK_14535at 3177.921 kb on + strand, within OKGIIK_14535at 3177.922 kb on - strand, within OKGIIK_14535at 3177.922 kb on - strand, within OKGIIK_14535at 3177.922 kb on - strand, within OKGIIK_14535at 3177.922 kb on - strand, within OKGIIK_14535at 3177.922 kb on - strand, within OKGIIK_14535at 3177.949 kb on + strand, within OKGIIK_14535at 3177.949 kb on + strand, within OKGIIK_14535at 3177.949 kb on + strand, within OKGIIK_14535at 3177.949 kb on + strand, within OKGIIK_14535at 3177.949 kb on + strand, within OKGIIK_14535at 3177.949 kb on + strand, within OKGIIK_14535at 3177.949 kb on + strand, within OKGIIK_14535at 3177.949 kb on + strand, within OKGIIK_14535at 3177.950 kb on - strand, within OKGIIK_14535at 3177.950 kb on - strand, within OKGIIK_14535at 3177.950 kb on - strand, within OKGIIK_14535at 3177.950 kb on - strand, within OKGIIK_14535at 3177.959 kb on + strand, within OKGIIK_14535at 3177.960 kb on + strand, within OKGIIK_14535at 3177.960 kb on + strand, within OKGIIK_14535at 3177.960 kb on + strand, within OKGIIK_14535at 3177.960 kb on + strand, within OKGIIK_14535at 3177.960 kb on + strand, within OKGIIK_14535at 3177.960 kb on + strand, within OKGIIK_14535at 3177.960 kb on + strand, within OKGIIK_14535at 3177.960 kb on + strand, within OKGIIK_14535at 3177.960 kb on + strand, within OKGIIK_14535at 3177.960 kb on + strand, within OKGIIK_14535at 3177.961 kb on - strand, within OKGIIK_14535at 3177.961 kb on - strand, within OKGIIK_14535at 3177.961 kb on - strand, within OKGIIK_14535at 3177.961 kb on - strand, within OKGIIK_14535at 3177.961 kb on - strand, within OKGIIK_14535at 3177.961 kb on - strand, within OKGIIK_14535at 3177.961 kb on - strand, within OKGIIK_14535at 3178.059 kb on + strand, within OKGIIK_14535at 3178.059 kb on + strand, within OKGIIK_14535at 3178.059 kb on + strand, within OKGIIK_14535at 3178.059 kb on + strand, within OKGIIK_14535at 3178.059 kb on + strand, within OKGIIK_14535at 3178.060 kb on - strand, within OKGIIK_14535at 3178.060 kb on - strand, within OKGIIK_14535at 3178.060 kb on - strand, within OKGIIK_14535at 3178.060 kb on - strand, within OKGIIK_14535at 3178.076 kb on + strand, within OKGIIK_14535at 3178.076 kb on + strand, within OKGIIK_14535at 3178.077 kb on - strand, within OKGIIK_14535at 3178.106 kb on + strand, within OKGIIK_14535at 3178.106 kb on + strand, within OKGIIK_14535at 3178.106 kb on + strand, within OKGIIK_14535at 3178.107 kb on - strand, within OKGIIK_14535at 3178.207 kb on + strand, within OKGIIK_14535at 3178.207 kb on + strand, within OKGIIK_14535at 3178.207 kb on + strand, within OKGIIK_14535at 3178.207 kb on + strand, within OKGIIK_14535at 3178.207 kb on + strand, within OKGIIK_14535at 3178.207 kb on + strand, within OKGIIK_14535at 3178.207 kb on + strand, within OKGIIK_14535at 3178.208 kb on - strand, within OKGIIK_14535at 3178.208 kb on - strand, within OKGIIK_14535at 3178.208 kb on - strand, within OKGIIK_14535at 3178.208 kb on - strand, within OKGIIK_14535at 3178.208 kb on - strand, within OKGIIK_14535at 3178.208 kb on - strand, within OKGIIK_14535at 3178.208 kb on - strand, within OKGIIK_14535at 3178.208 kb on - strand, within OKGIIK_14535at 3178.233 kb on + strand, within OKGIIK_14535at 3178.383 kb on + strand, within OKGIIK_14535at 3178.383 kb on + strand, within OKGIIK_14535at 3178.383 kb on + strand, within OKGIIK_14535at 3178.383 kb on + strand, within OKGIIK_14535at 3178.383 kb on + strand, within OKGIIK_14535at 3178.383 kb on + strand, within OKGIIK_14535at 3178.383 kb on + strand, within OKGIIK_14535at 3178.384 kb on - strand, within OKGIIK_14535at 3178.384 kb on - strand, within OKGIIK_14535at 3178.384 kb on - strand, within OKGIIK_14535at 3178.384 kb on - strand, within OKGIIK_14535at 3178.384 kb on - strand, within OKGIIK_14535at 3178.384 kb on - strand, within OKGIIK_14535at 3178.384 kb on - strand, within OKGIIK_14535at 3178.384 kb on - strand, within OKGIIK_14535at 3178.384 kb on - strand, within OKGIIK_14535at 3178.685 kb on + strand, within OKGIIK_14540at 3178.686 kb on - strand, within OKGIIK_14540at 3178.686 kb on - strand, within OKGIIK_14540at 3178.686 kb on - strand, within OKGIIK_14540at 3178.686 kb on - strand, within OKGIIK_14540at 3178.866 kb on + strandat 3178.866 kb on + strandat 3178.866 kb on + strandat 3178.866 kb on + strandat 3178.867 kb on - strandat 3178.867 kb on - strandat 3179.560 kb on + strand, within OKGIIK_14545at 3179.560 kb on + strand, within OKGIIK_14545at 3179.560 kb on + strand, within OKGIIK_14545at 3179.560 kb on + strand, within OKGIIK_14545at 3179.560 kb on + strand, within OKGIIK_14545at 3179.560 kb on + strand, within OKGIIK_14545at 3179.560 kb on + strand, within OKGIIK_14545at 3179.560 kb on + strand, within OKGIIK_14545at 3179.561 kb on - strand, within OKGIIK_14545at 3179.572 kb on + strand, within OKGIIK_14545at 3179.572 kb on + strand, within OKGIIK_14545at 3179.679 kb on + strand, within OKGIIK_14545at 3179.680 kb on - strand, within OKGIIK_14545at 3179.686 kb on + strand, within OKGIIK_14545at 3179.686 kb on + strand, within OKGIIK_14545at 3179.686 kb on + strand, within OKGIIK_14545at 3179.687 kb on - strand, within OKGIIK_14545at 3179.687 kb on - strand, within OKGIIK_14545at 3179.687 kb on - strand, within OKGIIK_14545at 3179.687 kb on - strand, within OKGIIK_14545at 3179.687 kb on - strand, within OKGIIK_14545at 3179.687 kb on - strand, within OKGIIK_14545at 3179.687 kb on - strand, within OKGIIK_14545

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
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3,177,548 + OKGIIK_14530 0.84 -0.7
3,177,549 - OKGIIK_14530 0.84 -1.1
3,177,552 + OKGIIK_14530 0.84 -0.3
3,177,552 + OKGIIK_14530 0.84 -1.5
3,177,552 + OKGIIK_14530 0.84 +0.1
3,177,552 + OKGIIK_14530 0.84 -0.6
3,177,552 + OKGIIK_14530 0.84 -0.5
3,177,552 + OKGIIK_14530 0.84 -1.8
3,177,553 - OKGIIK_14530 0.84 -1.1
3,177,553 - OKGIIK_14530 0.84 +1.4
3,177,553 - OKGIIK_14530 0.84 +0.9
3,177,553 - OKGIIK_14530 0.84 -0.6
3,177,553 - OKGIIK_14530 0.84 -0.2
3,177,553 - OKGIIK_14530 0.84 -0.4
3,177,553 - OKGIIK_14530 0.84 +1.6
3,177,553 - OKGIIK_14530 0.84 -0.5
3,177,754 + OKGIIK_14535 0.12 -0.1
3,177,754 + OKGIIK_14535 0.12 +0.9
3,177,754 + OKGIIK_14535 0.12 +0.1
3,177,754 + OKGIIK_14535 0.12 -0.1
3,177,754 + OKGIIK_14535 0.12 -2.0
3,177,754 + OKGIIK_14535 0.12 -0.1
3,177,754 + OKGIIK_14535 0.12 -0.1
3,177,754 + OKGIIK_14535 0.12 -0.1
3,177,754 + OKGIIK_14535 0.12 -0.6
3,177,754 + OKGIIK_14535 0.12 -1.1
3,177,754 + OKGIIK_14535 0.12 +0.2
3,177,754 + OKGIIK_14535 0.12 +0.4
3,177,755 - OKGIIK_14535 0.12 -1.6
3,177,755 - OKGIIK_14535 0.12 +0.4
3,177,755 - OKGIIK_14535 0.12 -0.6
3,177,755 - OKGIIK_14535 0.12 -1.2
3,177,755 - OKGIIK_14535 0.12 -0.6
3,177,755 - OKGIIK_14535 0.12 -0.4
3,177,755 - OKGIIK_14535 0.12 +0.6
3,177,755 - OKGIIK_14535 0.12 -0.6
3,177,755 - OKGIIK_14535 0.12 +0.6
3,177,755 - OKGIIK_14535 0.12 -1.2
3,177,755 - OKGIIK_14535 0.12 +0.0
3,177,755 - OKGIIK_14535 0.12 +0.9
3,177,755 - OKGIIK_14535 0.12 -1.1
3,177,824 - OKGIIK_14535 0.20 +0.5
3,177,884 + OKGIIK_14535 0.27 +0.0
3,177,884 + OKGIIK_14535 0.27 +1.4
3,177,884 + OKGIIK_14535 0.27 -1.2
3,177,884 + OKGIIK_14535 0.27 -1.0
3,177,884 + OKGIIK_14535 0.27 -1.0
3,177,885 - OKGIIK_14535 0.27 -1.8
3,177,885 - OKGIIK_14535 0.27 -1.0
3,177,885 - OKGIIK_14535 0.27 +0.7
3,177,885 - OKGIIK_14535 0.27 -1.2
3,177,885 - OKGIIK_14535 0.27 -0.4
3,177,885 - OKGIIK_14535 0.27 -0.1
3,177,885 - OKGIIK_14535 0.27 -0.7
3,177,885 - OKGIIK_14535 0.27 -0.1
3,177,921 + OKGIIK_14535 0.31 +0.7
3,177,921 + OKGIIK_14535 0.31 -0.6
3,177,921 + OKGIIK_14535 0.31 -0.1
3,177,921 + OKGIIK_14535 0.31 -0.3
3,177,921 + OKGIIK_14535 0.31 -0.3
3,177,921 + OKGIIK_14535 0.31 -1.6
3,177,922 - OKGIIK_14535 0.31 -2.6
3,177,922 - OKGIIK_14535 0.31 -1.1
3,177,922 - OKGIIK_14535 0.31 -0.5
3,177,922 - OKGIIK_14535 0.31 -1.0
3,177,922 - OKGIIK_14535 0.31 +0.3
3,177,949 + OKGIIK_14535 0.34 +0.4
3,177,949 + OKGIIK_14535 0.34 +0.4
3,177,949 + OKGIIK_14535 0.34 +0.6
3,177,949 + OKGIIK_14535 0.34 -0.6
3,177,949 + OKGIIK_14535 0.34 -0.6
3,177,949 + OKGIIK_14535 0.34 +0.5
3,177,949 + OKGIIK_14535 0.34 -1.1
3,177,949 + OKGIIK_14535 0.34 -1.0
3,177,950 - OKGIIK_14535 0.35 -1.7
3,177,950 - OKGIIK_14535 0.35 +0.7
3,177,950 - OKGIIK_14535 0.35 +1.9
3,177,950 - OKGIIK_14535 0.35 -2.0
3,177,959 + OKGIIK_14535 0.36 -0.0
3,177,960 + OKGIIK_14535 0.36 -0.2
3,177,960 + OKGIIK_14535 0.36 +0.4
3,177,960 + OKGIIK_14535 0.36 -0.6
3,177,960 + OKGIIK_14535 0.36 +0.6
3,177,960 + OKGIIK_14535 0.36 -1.1
3,177,960 + OKGIIK_14535 0.36 -0.6
3,177,960 + OKGIIK_14535 0.36 -0.8
3,177,960 + OKGIIK_14535 0.36 -0.8
3,177,960 + OKGIIK_14535 0.36 -0.2
3,177,960 + OKGIIK_14535 0.36 -2.0
3,177,961 - OKGIIK_14535 0.36 -0.6
3,177,961 - OKGIIK_14535 0.36 +1.4
3,177,961 - OKGIIK_14535 0.36 -0.9
3,177,961 - OKGIIK_14535 0.36 -2.2
3,177,961 - OKGIIK_14535 0.36 -0.6
3,177,961 - OKGIIK_14535 0.36 +0.5
3,177,961 - OKGIIK_14535 0.36 -1.0
3,178,059 + OKGIIK_14535 0.47 -2.0
3,178,059 + OKGIIK_14535 0.47 +0.9
3,178,059 + OKGIIK_14535 0.47 -1.2
3,178,059 + OKGIIK_14535 0.47 -0.6
3,178,059 + OKGIIK_14535 0.47 +0.9
3,178,060 - OKGIIK_14535 0.47 -1.8
3,178,060 - OKGIIK_14535 0.47 +0.7
3,178,060 - OKGIIK_14535 0.47 -2.1
3,178,060 - OKGIIK_14535 0.47 -1.2
3,178,076 + OKGIIK_14535 0.49 -0.6
3,178,076 + OKGIIK_14535 0.49 -0.5
3,178,077 - OKGIIK_14535 0.49 -0.8
3,178,106 + OKGIIK_14535 0.53 -0.4
3,178,106 + OKGIIK_14535 0.53 -2.7
3,178,106 + OKGIIK_14535 0.53 -0.3
3,178,107 - OKGIIK_14535 0.53 +1.7
3,178,207 + OKGIIK_14535 0.64 -0.2
3,178,207 + OKGIIK_14535 0.64 +0.6
3,178,207 + OKGIIK_14535 0.64 -0.6
3,178,207 + OKGIIK_14535 0.64 -0.6
3,178,207 + OKGIIK_14535 0.64 -1.0
3,178,207 + OKGIIK_14535 0.64 +0.4
3,178,207 + OKGIIK_14535 0.64 -1.1
3,178,208 - OKGIIK_14535 0.64 -1.2
3,178,208 - OKGIIK_14535 0.64 -0.6
3,178,208 - OKGIIK_14535 0.64 -1.6
3,178,208 - OKGIIK_14535 0.64 -0.6
3,178,208 - OKGIIK_14535 0.64 +0.6
3,178,208 - OKGIIK_14535 0.64 -0.4
3,178,208 - OKGIIK_14535 0.64 -1.1
3,178,208 - OKGIIK_14535 0.64 -1.4
3,178,233 + OKGIIK_14535 0.67 -2.0
3,178,383 + OKGIIK_14535 0.85 -1.2
3,178,383 + OKGIIK_14535 0.85 -1.0
3,178,383 + OKGIIK_14535 0.85 -0.6
3,178,383 + OKGIIK_14535 0.85 +1.4
3,178,383 + OKGIIK_14535 0.85 -1.4
3,178,383 + OKGIIK_14535 0.85 -0.0
3,178,383 + OKGIIK_14535 0.85 -1.4
3,178,384 - OKGIIK_14535 0.85 -0.2
3,178,384 - OKGIIK_14535 0.85 -0.2
3,178,384 - OKGIIK_14535 0.85 -1.0
3,178,384 - OKGIIK_14535 0.85 -0.4
3,178,384 - OKGIIK_14535 0.85 -2.1
3,178,384 - OKGIIK_14535 0.85 +0.4
3,178,384 - OKGIIK_14535 0.85 -0.6
3,178,384 - OKGIIK_14535 0.85 -1.2
3,178,384 - OKGIIK_14535 0.85 -1.4
3,178,685 + OKGIIK_14540 0.54 +1.0
3,178,686 - OKGIIK_14540 0.54 +0.4
3,178,686 - OKGIIK_14540 0.54 +0.9
3,178,686 - OKGIIK_14540 0.54 +0.1
3,178,686 - OKGIIK_14540 0.54 -1.4
3,178,866 + -0.2
3,178,866 + -0.0
3,178,866 + -1.0
3,178,866 + -0.6
3,178,867 - -0.2
3,178,867 - -2.6
3,179,560 + OKGIIK_14545 0.70 +0.6
3,179,560 + OKGIIK_14545 0.70 +1.0
3,179,560 + OKGIIK_14545 0.70 +0.6
3,179,560 + OKGIIK_14545 0.70 -0.6
3,179,560 + OKGIIK_14545 0.70 -2.1
3,179,560 + OKGIIK_14545 0.70 +0.0
3,179,560 + OKGIIK_14545 0.70 -0.6
3,179,560 + OKGIIK_14545 0.70 -3.8
3,179,561 - OKGIIK_14545 0.70 -1.0
3,179,572 + OKGIIK_14545 0.71 -1.2
3,179,572 + OKGIIK_14545 0.71 -0.0
3,179,679 + OKGIIK_14545 0.87 -2.2
3,179,680 - OKGIIK_14545 0.87 -0.2
3,179,686 + OKGIIK_14545 0.88 -2.1
3,179,686 + OKGIIK_14545 0.88 -1.6
3,179,686 + OKGIIK_14545 0.88 +0.4
3,179,687 - OKGIIK_14545 0.88 +0.4
3,179,687 - OKGIIK_14545 0.88 +0.7
3,179,687 - OKGIIK_14545 0.88 -1.3
3,179,687 - OKGIIK_14545 0.88 +0.4
3,179,687 - OKGIIK_14545 0.88 -0.7
3,179,687 - OKGIIK_14545 0.88 -1.1
3,179,687 - OKGIIK_14545 0.88 -2.0

Or see this region's nucleotide sequence