Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_11550

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntltaE and lptG are separated by 73 nucleotideslptG and lptF overlap by 4 nucleotides OKGIIK_11540: OKGIIK_11540 - hypothetical protein, at 2,478,306 to 2,478,953 _11540 OKGIIK_11545: ltaE - low-specificity L-threonine aldolase, at 2,478,854 to 2,479,873 ltaE OKGIIK_11550: lptG - LPS export ABC transporter permease LptG, at 2,479,947 to 2,481,047 lptG OKGIIK_11555: lptF - LPS export ABC transporter permease LptF, at 2,481,044 to 2,482,159 lptF Position (kb) 2479 2480 2481 2482Strain fitness (log2 ratio) -3 -2 -1 0 1at 2478.951 kb on + strandat 2478.951 kb on + strandat 2478.951 kb on + strandat 2478.951 kb on + strandat 2478.951 kb on + strandat 2478.952 kb on - strandat 2478.952 kb on - strandat 2479.044 kb on + strand, within ltaEat 2479.044 kb on + strand, within ltaEat 2479.044 kb on + strand, within ltaEat 2479.044 kb on + strand, within ltaEat 2479.045 kb on - strand, within ltaEat 2479.045 kb on - strand, within ltaEat 2479.045 kb on - strand, within ltaEat 2479.045 kb on - strand, within ltaEat 2479.045 kb on - strand, within ltaEat 2479.095 kb on + strand, within ltaEat 2479.096 kb on - strand, within ltaEat 2479.096 kb on - strand, within ltaEat 2479.096 kb on - strand, within ltaEat 2479.096 kb on - strand, within ltaEat 2479.150 kb on - strand, within ltaEat 2479.150 kb on - strand, within ltaEat 2479.150 kb on - strand, within ltaEat 2479.150 kb on - strand, within ltaEat 2479.150 kb on - strand, within ltaEat 2479.150 kb on - strand, within ltaEat 2479.150 kb on - strand, within ltaEat 2479.150 kb on - strand, within ltaEat 2479.169 kb on + strand, within ltaEat 2479.170 kb on - strand, within ltaEat 2479.170 kb on - strand, within ltaEat 2479.170 kb on - strand, within ltaEat 2479.170 kb on - strand, within ltaEat 2479.356 kb on + strand, within ltaEat 2479.356 kb on + strand, within ltaEat 2479.356 kb on + strand, within ltaEat 2479.356 kb on + strand, within ltaEat 2479.356 kb on + strand, within ltaEat 2479.356 kb on + strand, within ltaEat 2479.356 kb on + strand, within ltaEat 2479.356 kb on + strand, within ltaEat 2479.357 kb on - strand, within ltaEat 2479.357 kb on - strand, within ltaEat 2479.357 kb on - strand, within ltaEat 2479.425 kb on + strand, within ltaEat 2479.425 kb on + strand, within ltaEat 2479.425 kb on + strand, within ltaEat 2479.426 kb on - strand, within ltaEat 2479.426 kb on - strand, within ltaEat 2479.426 kb on - strand, within ltaEat 2479.426 kb on - strand, within ltaEat 2479.480 kb on + strand, within ltaEat 2479.614 kb on + strand, within ltaEat 2479.614 kb on + strand, within ltaEat 2479.614 kb on + strand, within ltaEat 2479.614 kb on + strand, within ltaEat 2479.614 kb on + strand, within ltaEat 2479.614 kb on + strand, within ltaEat 2479.614 kb on + strand, within ltaEat 2479.614 kb on + strand, within ltaEat 2479.614 kb on + strand, within ltaEat 2479.614 kb on + strand, within ltaEat 2479.614 kb on + strand, within ltaEat 2479.614 kb on + strand, within ltaEat 2479.615 kb on - strand, within ltaEat 2479.615 kb on - strand, within ltaEat 2479.615 kb on - strand, within ltaEat 2479.615 kb on - strand, within ltaEat 2479.615 kb on - strand, within ltaEat 2479.615 kb on - strand, within ltaEat 2479.615 kb on - strand, within ltaEat 2479.615 kb on - strand, within ltaEat 2479.615 kb on - strand, within ltaEat 2479.615 kb on - strand, within ltaEat 2479.615 kb on - strand, within ltaEat 2479.615 kb on - strand, within ltaEat 2479.615 kb on - strand, within ltaEat 2479.615 kb on - strand, within ltaEat 2479.615 kb on - strand, within ltaEat 2479.615 kb on - strand, within ltaEat 2479.615 kb on - strand, within ltaEat 2479.641 kb on + strand, within ltaEat 2479.641 kb on + strand, within ltaEat 2479.641 kb on + strand, within ltaEat 2479.642 kb on - strand, within ltaEat 2479.642 kb on - strand, within ltaEat 2479.642 kb on - strand, within ltaEat 2479.642 kb on - strand, within ltaEat 2479.642 kb on - strand, within ltaEat 2479.642 kb on - strand, within ltaEat 2479.779 kb on + strandat 2479.779 kb on + strandat 2479.779 kb on + strandat 2479.780 kb on - strandat 2479.780 kb on - strandat 2479.780 kb on - strandat 2479.780 kb on - strandat 2479.780 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
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2,478,951 + +0.1
2,478,951 + -1.5
2,478,951 + +0.7
2,478,951 + -0.5
2,478,951 + +0.7
2,478,952 - -0.5
2,478,952 - +0.3
2,479,044 + ltaE OKGIIK_11545 0.19 -2.1
2,479,044 + ltaE OKGIIK_11545 0.19 -0.1
2,479,044 + ltaE OKGIIK_11545 0.19 -2.2
2,479,044 + ltaE OKGIIK_11545 0.19 +0.1
2,479,045 - ltaE OKGIIK_11545 0.19 -1.1
2,479,045 - ltaE OKGIIK_11545 0.19 -0.1
2,479,045 - ltaE OKGIIK_11545 0.19 -0.7
2,479,045 - ltaE OKGIIK_11545 0.19 +0.2
2,479,045 - ltaE OKGIIK_11545 0.19 -1.3
2,479,095 + ltaE OKGIIK_11545 0.24 +1.0
2,479,096 - ltaE OKGIIK_11545 0.24 +0.3
2,479,096 - ltaE OKGIIK_11545 0.24 +1.1
2,479,096 - ltaE OKGIIK_11545 0.24 +0.1
2,479,096 - ltaE OKGIIK_11545 0.24 -0.3
2,479,150 - ltaE OKGIIK_11545 0.29 -0.7
2,479,150 - ltaE OKGIIK_11545 0.29 -1.3
2,479,150 - ltaE OKGIIK_11545 0.29 -0.1
2,479,150 - ltaE OKGIIK_11545 0.29 -0.9
2,479,150 - ltaE OKGIIK_11545 0.29 -1.0
2,479,150 - ltaE OKGIIK_11545 0.29 -2.7
2,479,150 - ltaE OKGIIK_11545 0.29 +0.3
2,479,150 - ltaE OKGIIK_11545 0.29 -2.4
2,479,169 + ltaE OKGIIK_11545 0.31 +0.1
2,479,170 - ltaE OKGIIK_11545 0.31 +0.2
2,479,170 - ltaE OKGIIK_11545 0.31 -1.1
2,479,170 - ltaE OKGIIK_11545 0.31 -0.2
2,479,170 - ltaE OKGIIK_11545 0.31 -2.8
2,479,356 + ltaE OKGIIK_11545 0.49 -0.9
2,479,356 + ltaE OKGIIK_11545 0.49 +0.4
2,479,356 + ltaE OKGIIK_11545 0.49 -0.5
2,479,356 + ltaE OKGIIK_11545 0.49 -0.7
2,479,356 + ltaE OKGIIK_11545 0.49 +1.2
2,479,356 + ltaE OKGIIK_11545 0.49 -1.7
2,479,356 + ltaE OKGIIK_11545 0.49 -0.3
2,479,356 + ltaE OKGIIK_11545 0.49 +0.8
2,479,357 - ltaE OKGIIK_11545 0.49 +1.0
2,479,357 - ltaE OKGIIK_11545 0.49 -1.3
2,479,357 - ltaE OKGIIK_11545 0.49 +0.7
2,479,425 + ltaE OKGIIK_11545 0.56 -0.5
2,479,425 + ltaE OKGIIK_11545 0.56 +0.2
2,479,425 + ltaE OKGIIK_11545 0.56 -0.5
2,479,426 - ltaE OKGIIK_11545 0.56 -0.8
2,479,426 - ltaE OKGIIK_11545 0.56 +1.1
2,479,426 - ltaE OKGIIK_11545 0.56 -0.3
2,479,426 - ltaE OKGIIK_11545 0.56 +0.7
2,479,480 + ltaE OKGIIK_11545 0.61 -0.9
2,479,614 + ltaE OKGIIK_11545 0.75 -2.4
2,479,614 + ltaE OKGIIK_11545 0.75 -1.5
2,479,614 + ltaE OKGIIK_11545 0.75 -0.9
2,479,614 + ltaE OKGIIK_11545 0.75 -0.3
2,479,614 + ltaE OKGIIK_11545 0.75 -1.1
2,479,614 + ltaE OKGIIK_11545 0.75 -0.5
2,479,614 + ltaE OKGIIK_11545 0.75 +0.2
2,479,614 + ltaE OKGIIK_11545 0.75 -0.3
2,479,614 + ltaE OKGIIK_11545 0.75 -0.5
2,479,614 + ltaE OKGIIK_11545 0.75 +0.7
2,479,614 + ltaE OKGIIK_11545 0.75 +0.7
2,479,614 + ltaE OKGIIK_11545 0.75 +1.5
2,479,615 - ltaE OKGIIK_11545 0.75 -0.5
2,479,615 - ltaE OKGIIK_11545 0.75 -0.5
2,479,615 - ltaE OKGIIK_11545 0.75 -0.8
2,479,615 - ltaE OKGIIK_11545 0.75 +0.1
2,479,615 - ltaE OKGIIK_11545 0.75 +0.8
2,479,615 - ltaE OKGIIK_11545 0.75 -0.3
2,479,615 - ltaE OKGIIK_11545 0.75 +1.7
2,479,615 - ltaE OKGIIK_11545 0.75 -0.5
2,479,615 - ltaE OKGIIK_11545 0.75 -1.3
2,479,615 - ltaE OKGIIK_11545 0.75 +1.4
2,479,615 - ltaE OKGIIK_11545 0.75 +0.5
2,479,615 - ltaE OKGIIK_11545 0.75 -0.9
2,479,615 - ltaE OKGIIK_11545 0.75 -1.1
2,479,615 - ltaE OKGIIK_11545 0.75 +0.7
2,479,615 - ltaE OKGIIK_11545 0.75 -1.9
2,479,615 - ltaE OKGIIK_11545 0.75 +0.3
2,479,615 - ltaE OKGIIK_11545 0.75 -1.5
2,479,641 + ltaE OKGIIK_11545 0.77 -0.9
2,479,641 + ltaE OKGIIK_11545 0.77 -1.2
2,479,641 + ltaE OKGIIK_11545 0.77 -0.9
2,479,642 - ltaE OKGIIK_11545 0.77 -1.4
2,479,642 - ltaE OKGIIK_11545 0.77 -0.1
2,479,642 - ltaE OKGIIK_11545 0.77 +0.3
2,479,642 - ltaE OKGIIK_11545 0.77 +0.3
2,479,642 - ltaE OKGIIK_11545 0.77 +1.2
2,479,642 - ltaE OKGIIK_11545 0.77 -1.5
2,479,779 + +0.4
2,479,779 + -1.2
2,479,779 + -2.3
2,479,780 - -0.7
2,479,780 - -1.1
2,479,780 - +0.6
2,479,780 - -0.6
2,479,780 - -1.7

Or see this region's nucleotide sequence