Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ltaE and lptG are separated by 73 nucleotides lptG and lptF overlap by 4 nucleotides
OKGIIK_11540: OKGIIK_11540 - hypothetical protein, at 2,478,306 to 2,478,953
_11540
OKGIIK_11545: ltaE - low-specificity L-threonine aldolase, at 2,478,854 to 2,479,873
ltaE
OKGIIK_11550: lptG - LPS export ABC transporter permease LptG, at 2,479,947 to 2,481,047
lptG
OKGIIK_11555: lptF - LPS export ABC transporter permease LptF, at 2,481,044 to 2,482,159
lptF
Position (kb)
2479
2480
2481
2482 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2478.951 kb on + strand at 2478.951 kb on + strand at 2478.951 kb on + strand at 2478.951 kb on + strand at 2478.951 kb on + strand at 2478.952 kb on - strand at 2478.952 kb on - strand at 2479.044 kb on + strand, within ltaE at 2479.044 kb on + strand, within ltaE at 2479.044 kb on + strand, within ltaE at 2479.044 kb on + strand, within ltaE at 2479.045 kb on - strand, within ltaE at 2479.045 kb on - strand, within ltaE at 2479.045 kb on - strand, within ltaE at 2479.045 kb on - strand, within ltaE at 2479.045 kb on - strand, within ltaE at 2479.095 kb on + strand, within ltaE at 2479.096 kb on - strand, within ltaE at 2479.096 kb on - strand, within ltaE at 2479.096 kb on - strand, within ltaE at 2479.096 kb on - strand, within ltaE at 2479.150 kb on - strand, within ltaE at 2479.150 kb on - strand, within ltaE at 2479.150 kb on - strand, within ltaE at 2479.150 kb on - strand, within ltaE at 2479.150 kb on - strand, within ltaE at 2479.150 kb on - strand, within ltaE at 2479.150 kb on - strand, within ltaE at 2479.150 kb on - strand, within ltaE at 2479.169 kb on + strand, within ltaE at 2479.170 kb on - strand, within ltaE at 2479.170 kb on - strand, within ltaE at 2479.170 kb on - strand, within ltaE at 2479.170 kb on - strand, within ltaE at 2479.356 kb on + strand, within ltaE at 2479.356 kb on + strand, within ltaE at 2479.356 kb on + strand, within ltaE at 2479.356 kb on + strand, within ltaE at 2479.356 kb on + strand, within ltaE at 2479.356 kb on + strand, within ltaE at 2479.356 kb on + strand, within ltaE at 2479.356 kb on + strand, within ltaE at 2479.357 kb on - strand, within ltaE at 2479.357 kb on - strand, within ltaE at 2479.357 kb on - strand, within ltaE at 2479.425 kb on + strand, within ltaE at 2479.425 kb on + strand, within ltaE at 2479.425 kb on + strand, within ltaE at 2479.426 kb on - strand, within ltaE at 2479.426 kb on - strand, within ltaE at 2479.426 kb on - strand, within ltaE at 2479.426 kb on - strand, within ltaE at 2479.480 kb on + strand, within ltaE at 2479.614 kb on + strand, within ltaE at 2479.614 kb on + strand, within ltaE at 2479.614 kb on + strand, within ltaE at 2479.614 kb on + strand, within ltaE at 2479.614 kb on + strand, within ltaE at 2479.614 kb on + strand, within ltaE at 2479.614 kb on + strand, within ltaE at 2479.614 kb on + strand, within ltaE at 2479.614 kb on + strand, within ltaE at 2479.614 kb on + strand, within ltaE at 2479.614 kb on + strand, within ltaE at 2479.614 kb on + strand, within ltaE at 2479.615 kb on - strand, within ltaE at 2479.615 kb on - strand, within ltaE at 2479.615 kb on - strand, within ltaE at 2479.615 kb on - strand, within ltaE at 2479.615 kb on - strand, within ltaE at 2479.615 kb on - strand, within ltaE at 2479.615 kb on - strand, within ltaE at 2479.615 kb on - strand, within ltaE at 2479.615 kb on - strand, within ltaE at 2479.615 kb on - strand, within ltaE at 2479.615 kb on - strand, within ltaE at 2479.615 kb on - strand, within ltaE at 2479.615 kb on - strand, within ltaE at 2479.615 kb on - strand, within ltaE at 2479.615 kb on - strand, within ltaE at 2479.615 kb on - strand, within ltaE at 2479.615 kb on - strand, within ltaE at 2479.641 kb on + strand, within ltaE at 2479.641 kb on + strand, within ltaE at 2479.641 kb on + strand, within ltaE at 2479.642 kb on - strand, within ltaE at 2479.642 kb on - strand, within ltaE at 2479.642 kb on - strand, within ltaE at 2479.642 kb on - strand, within ltaE at 2479.642 kb on - strand, within ltaE at 2479.642 kb on - strand, within ltaE at 2479.779 kb on + strand at 2479.779 kb on + strand at 2479.779 kb on + strand at 2479.780 kb on - strand at 2479.780 kb on - strand at 2479.780 kb on - strand at 2479.780 kb on - strand at 2479.780 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x remove 2,478,951 + +0.1 2,478,951 + -1.5 2,478,951 + +0.7 2,478,951 + -0.5 2,478,951 + +0.7 2,478,952 - -0.5 2,478,952 - +0.3 2,479,044 + ltaE OKGIIK_11545 0.19 -2.1 2,479,044 + ltaE OKGIIK_11545 0.19 -0.1 2,479,044 + ltaE OKGIIK_11545 0.19 -2.2 2,479,044 + ltaE OKGIIK_11545 0.19 +0.1 2,479,045 - ltaE OKGIIK_11545 0.19 -1.1 2,479,045 - ltaE OKGIIK_11545 0.19 -0.1 2,479,045 - ltaE OKGIIK_11545 0.19 -0.7 2,479,045 - ltaE OKGIIK_11545 0.19 +0.2 2,479,045 - ltaE OKGIIK_11545 0.19 -1.3 2,479,095 + ltaE OKGIIK_11545 0.24 +1.0 2,479,096 - ltaE OKGIIK_11545 0.24 +0.3 2,479,096 - ltaE OKGIIK_11545 0.24 +1.1 2,479,096 - ltaE OKGIIK_11545 0.24 +0.1 2,479,096 - ltaE OKGIIK_11545 0.24 -0.3 2,479,150 - ltaE OKGIIK_11545 0.29 -0.7 2,479,150 - ltaE OKGIIK_11545 0.29 -1.3 2,479,150 - ltaE OKGIIK_11545 0.29 -0.1 2,479,150 - ltaE OKGIIK_11545 0.29 -0.9 2,479,150 - ltaE OKGIIK_11545 0.29 -1.0 2,479,150 - ltaE OKGIIK_11545 0.29 -2.7 2,479,150 - ltaE OKGIIK_11545 0.29 +0.3 2,479,150 - ltaE OKGIIK_11545 0.29 -2.4 2,479,169 + ltaE OKGIIK_11545 0.31 +0.1 2,479,170 - ltaE OKGIIK_11545 0.31 +0.2 2,479,170 - ltaE OKGIIK_11545 0.31 -1.1 2,479,170 - ltaE OKGIIK_11545 0.31 -0.2 2,479,170 - ltaE OKGIIK_11545 0.31 -2.8 2,479,356 + ltaE OKGIIK_11545 0.49 -0.9 2,479,356 + ltaE OKGIIK_11545 0.49 +0.4 2,479,356 + ltaE OKGIIK_11545 0.49 -0.5 2,479,356 + ltaE OKGIIK_11545 0.49 -0.7 2,479,356 + ltaE OKGIIK_11545 0.49 +1.2 2,479,356 + ltaE OKGIIK_11545 0.49 -1.7 2,479,356 + ltaE OKGIIK_11545 0.49 -0.3 2,479,356 + ltaE OKGIIK_11545 0.49 +0.8 2,479,357 - ltaE OKGIIK_11545 0.49 +1.0 2,479,357 - ltaE OKGIIK_11545 0.49 -1.3 2,479,357 - ltaE OKGIIK_11545 0.49 +0.7 2,479,425 + ltaE OKGIIK_11545 0.56 -0.5 2,479,425 + ltaE OKGIIK_11545 0.56 +0.2 2,479,425 + ltaE OKGIIK_11545 0.56 -0.5 2,479,426 - ltaE OKGIIK_11545 0.56 -0.8 2,479,426 - ltaE OKGIIK_11545 0.56 +1.1 2,479,426 - ltaE OKGIIK_11545 0.56 -0.3 2,479,426 - ltaE OKGIIK_11545 0.56 +0.7 2,479,480 + ltaE OKGIIK_11545 0.61 -0.9 2,479,614 + ltaE OKGIIK_11545 0.75 -2.4 2,479,614 + ltaE OKGIIK_11545 0.75 -1.5 2,479,614 + ltaE OKGIIK_11545 0.75 -0.9 2,479,614 + ltaE OKGIIK_11545 0.75 -0.3 2,479,614 + ltaE OKGIIK_11545 0.75 -1.1 2,479,614 + ltaE OKGIIK_11545 0.75 -0.5 2,479,614 + ltaE OKGIIK_11545 0.75 +0.2 2,479,614 + ltaE OKGIIK_11545 0.75 -0.3 2,479,614 + ltaE OKGIIK_11545 0.75 -0.5 2,479,614 + ltaE OKGIIK_11545 0.75 +0.7 2,479,614 + ltaE OKGIIK_11545 0.75 +0.7 2,479,614 + ltaE OKGIIK_11545 0.75 +1.5 2,479,615 - ltaE OKGIIK_11545 0.75 -0.5 2,479,615 - ltaE OKGIIK_11545 0.75 -0.5 2,479,615 - ltaE OKGIIK_11545 0.75 -0.8 2,479,615 - ltaE OKGIIK_11545 0.75 +0.1 2,479,615 - ltaE OKGIIK_11545 0.75 +0.8 2,479,615 - ltaE OKGIIK_11545 0.75 -0.3 2,479,615 - ltaE OKGIIK_11545 0.75 +1.7 2,479,615 - ltaE OKGIIK_11545 0.75 -0.5 2,479,615 - ltaE OKGIIK_11545 0.75 -1.3 2,479,615 - ltaE OKGIIK_11545 0.75 +1.4 2,479,615 - ltaE OKGIIK_11545 0.75 +0.5 2,479,615 - ltaE OKGIIK_11545 0.75 -0.9 2,479,615 - ltaE OKGIIK_11545 0.75 -1.1 2,479,615 - ltaE OKGIIK_11545 0.75 +0.7 2,479,615 - ltaE OKGIIK_11545 0.75 -1.9 2,479,615 - ltaE OKGIIK_11545 0.75 +0.3 2,479,615 - ltaE OKGIIK_11545 0.75 -1.5 2,479,641 + ltaE OKGIIK_11545 0.77 -0.9 2,479,641 + ltaE OKGIIK_11545 0.77 -1.2 2,479,641 + ltaE OKGIIK_11545 0.77 -0.9 2,479,642 - ltaE OKGIIK_11545 0.77 -1.4 2,479,642 - ltaE OKGIIK_11545 0.77 -0.1 2,479,642 - ltaE OKGIIK_11545 0.77 +0.3 2,479,642 - ltaE OKGIIK_11545 0.77 +0.3 2,479,642 - ltaE OKGIIK_11545 0.77 +1.2 2,479,642 - ltaE OKGIIK_11545 0.77 -1.5 2,479,779 + +0.4 2,479,779 + -1.2 2,479,779 + -2.3 2,479,780 - -0.7 2,479,780 - -1.1 2,479,780 - +0.6 2,479,780 - -0.6 2,479,780 - -1.7
Or see this region's nucleotide sequence