Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_11500

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_11495 and OKGIIK_11500 are separated by 130 nucleotidesOKGIIK_11500 and purL are separated by 29 nucleotides OKGIIK_11495: OKGIIK_11495 - Glycosyl transferase family 2, at 2,466,892 to 2,467,734 _11495 OKGIIK_11500: OKGIIK_11500 - hypothetical protein, at 2,467,865 to 2,468,611 _11500 OKGIIK_11505: purL - phosphoribosylformylglycinamidine synthase, at 2,468,641 to 2,472,507 purL Position (kb) 2467 2468 2469Strain fitness (log2 ratio) -3 -2 -1 0 1at 2467.181 kb on + strand, within OKGIIK_11495at 2467.181 kb on + strand, within OKGIIK_11495at 2467.181 kb on + strand, within OKGIIK_11495at 2467.181 kb on + strand, within OKGIIK_11495at 2467.181 kb on + strand, within OKGIIK_11495at 2467.181 kb on + strand, within OKGIIK_11495at 2467.181 kb on + strand, within OKGIIK_11495at 2467.181 kb on + strand, within OKGIIK_11495at 2467.181 kb on + strand, within OKGIIK_11495at 2467.181 kb on + strand, within OKGIIK_11495at 2467.182 kb on - strand, within OKGIIK_11495at 2467.182 kb on - strand, within OKGIIK_11495at 2467.182 kb on - strand, within OKGIIK_11495at 2467.182 kb on - strand, within OKGIIK_11495at 2467.182 kb on - strand, within OKGIIK_11495at 2467.277 kb on - strand, within OKGIIK_11495at 2467.277 kb on - strand, within OKGIIK_11495at 2467.277 kb on - strand, within OKGIIK_11495at 2467.559 kb on + strand, within OKGIIK_11495at 2467.559 kb on + strand, within OKGIIK_11495at 2467.559 kb on + strand, within OKGIIK_11495at 2467.560 kb on - strand, within OKGIIK_11495at 2467.560 kb on - strand, within OKGIIK_11495at 2467.560 kb on - strand, within OKGIIK_11495at 2467.560 kb on - strand, within OKGIIK_11495at 2467.560 kb on - strand, within OKGIIK_11495at 2467.565 kb on + strand, within OKGIIK_11495at 2467.565 kb on + strand, within OKGIIK_11495at 2467.565 kb on + strand, within OKGIIK_11495at 2467.565 kb on + strand, within OKGIIK_11495at 2467.565 kb on + strand, within OKGIIK_11495at 2467.565 kb on + strand, within OKGIIK_11495at 2467.566 kb on - strand, within OKGIIK_11495at 2467.566 kb on - strand, within OKGIIK_11495at 2467.566 kb on - strand, within OKGIIK_11495at 2467.566 kb on - strand, within OKGIIK_11495at 2467.566 kb on - strand, within OKGIIK_11495at 2467.566 kb on - strand, within OKGIIK_11495at 2467.566 kb on - strand, within OKGIIK_11495at 2467.566 kb on - strand, within OKGIIK_11495at 2467.566 kb on - strand, within OKGIIK_11495at 2467.566 kb on - strand, within OKGIIK_11495at 2467.566 kb on - strand, within OKGIIK_11495at 2467.566 kb on - strand, within OKGIIK_11495at 2467.791 kb on + strandat 2467.791 kb on + strandat 2467.791 kb on + strandat 2467.791 kb on + strandat 2467.791 kb on + strandat 2467.791 kb on + strandat 2467.791 kb on + strandat 2467.791 kb on + strandat 2467.791 kb on + strandat 2467.791 kb on + strandat 2467.792 kb on - strandat 2467.792 kb on - strandat 2467.792 kb on - strandat 2467.792 kb on - strandat 2467.792 kb on - strandat 2467.982 kb on + strand, within OKGIIK_11500at 2467.982 kb on + strand, within OKGIIK_11500at 2467.982 kb on + strand, within OKGIIK_11500at 2467.982 kb on + strand, within OKGIIK_11500at 2467.983 kb on - strand, within OKGIIK_11500at 2467.983 kb on - strand, within OKGIIK_11500at 2467.983 kb on - strand, within OKGIIK_11500at 2467.983 kb on - strand, within OKGIIK_11500at 2467.983 kb on - strand, within OKGIIK_11500at 2467.983 kb on - strand, within OKGIIK_11500at 2467.983 kb on - strand, within OKGIIK_11500at 2468.139 kb on + strand, within OKGIIK_11500at 2468.139 kb on + strand, within OKGIIK_11500at 2468.140 kb on - strand, within OKGIIK_11500at 2468.140 kb on - strand, within OKGIIK_11500at 2468.140 kb on - strand, within OKGIIK_11500

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
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2,467,181 + OKGIIK_11495 0.34 -1.3
2,467,181 + OKGIIK_11495 0.34 -0.3
2,467,181 + OKGIIK_11495 0.34 -0.9
2,467,181 + OKGIIK_11495 0.34 -1.6
2,467,181 + OKGIIK_11495 0.34 -0.5
2,467,181 + OKGIIK_11495 0.34 -1.8
2,467,181 + OKGIIK_11495 0.34 -1.3
2,467,181 + OKGIIK_11495 0.34 -0.5
2,467,181 + OKGIIK_11495 0.34 -1.3
2,467,181 + OKGIIK_11495 0.34 -0.3
2,467,182 - OKGIIK_11495 0.34 -0.9
2,467,182 - OKGIIK_11495 0.34 -1.1
2,467,182 - OKGIIK_11495 0.34 -1.1
2,467,182 - OKGIIK_11495 0.34 -2.0
2,467,182 - OKGIIK_11495 0.34 -0.8
2,467,277 - OKGIIK_11495 0.46 -1.0
2,467,277 - OKGIIK_11495 0.46 -1.8
2,467,277 - OKGIIK_11495 0.46 -0.7
2,467,559 + OKGIIK_11495 0.79 +0.3
2,467,559 + OKGIIK_11495 0.79 -0.2
2,467,559 + OKGIIK_11495 0.79 -0.7
2,467,560 - OKGIIK_11495 0.79 -0.7
2,467,560 - OKGIIK_11495 0.79 -0.7
2,467,560 - OKGIIK_11495 0.79 -0.7
2,467,560 - OKGIIK_11495 0.79 -0.9
2,467,560 - OKGIIK_11495 0.79 -0.3
2,467,565 + OKGIIK_11495 0.80 -2.7
2,467,565 + OKGIIK_11495 0.80 -3.1
2,467,565 + OKGIIK_11495 0.80 -0.3
2,467,565 + OKGIIK_11495 0.80 +0.1
2,467,565 + OKGIIK_11495 0.80 +1.3
2,467,565 + OKGIIK_11495 0.80 -1.1
2,467,566 - OKGIIK_11495 0.80 -1.0
2,467,566 - OKGIIK_11495 0.80 -0.3
2,467,566 - OKGIIK_11495 0.80 -2.6
2,467,566 - OKGIIK_11495 0.80 -0.7
2,467,566 - OKGIIK_11495 0.80 +0.1
2,467,566 - OKGIIK_11495 0.80 -1.8
2,467,566 - OKGIIK_11495 0.80 -1.2
2,467,566 - OKGIIK_11495 0.80 -0.3
2,467,566 - OKGIIK_11495 0.80 -1.2
2,467,566 - OKGIIK_11495 0.80 -2.4
2,467,566 - OKGIIK_11495 0.80 -0.7
2,467,566 - OKGIIK_11495 0.80 -2.0
2,467,791 + -1.0
2,467,791 + -0.7
2,467,791 + -0.3
2,467,791 + +1.7
2,467,791 + -0.5
2,467,791 + +0.8
2,467,791 + +0.5
2,467,791 + -2.0
2,467,791 + +0.3
2,467,791 + +1.0
2,467,792 - -0.7
2,467,792 - +1.4
2,467,792 - -1.9
2,467,792 - -0.5
2,467,792 - +0.5
2,467,982 + OKGIIK_11500 0.16 +0.5
2,467,982 + OKGIIK_11500 0.16 +1.2
2,467,982 + OKGIIK_11500 0.16 +0.4
2,467,982 + OKGIIK_11500 0.16 -0.2
2,467,983 - OKGIIK_11500 0.16 -0.5
2,467,983 - OKGIIK_11500 0.16 -0.9
2,467,983 - OKGIIK_11500 0.16 -0.6
2,467,983 - OKGIIK_11500 0.16 +0.3
2,467,983 - OKGIIK_11500 0.16 +0.5
2,467,983 - OKGIIK_11500 0.16 -0.8
2,467,983 - OKGIIK_11500 0.16 -0.1
2,468,139 + OKGIIK_11500 0.37 +0.9
2,468,139 + OKGIIK_11500 0.37 +0.1
2,468,140 - OKGIIK_11500 0.37 +0.3
2,468,140 - OKGIIK_11500 0.37 -1.5
2,468,140 - OKGIIK_11500 0.37 +0.1

Or see this region's nucleotide sequence