Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_10000

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
2,158,626	-	yajC	OKGIIK_09995	0.69	-1.1
2,158,626	-	yajC	OKGIIK_09995	0.69	-2.0
2,158,626	-	yajC	OKGIIK_09995	0.69	-1.9
2,158,626	-	yajC	OKGIIK_09995	0.69	-1.5
2,158,626	-	yajC	OKGIIK_09995	0.69	-1.3
2,158,626	-	yajC	OKGIIK_09995	0.69	-0.5
2,158,626	-	yajC	OKGIIK_09995	0.69	-0.7
2,158,746	-				+0.0
2,158,746	-				+0.9
2,158,796	-				-0.2
2,158,796	-				+0.1
2,158,895	+				+0.7
2,158,896	-				-0.0
2,158,925	+				-0.3
2,158,925	+				-0.3
2,158,925	+				-0.1
2,158,925	+				-0.1
2,158,926	-				-0.1
2,158,926	-				-0.7
2,158,926	-				-0.7
2,158,926	-				-0.1
2,158,997	+				-0.0
2,158,998	-				+1.7
2,158,998	-				-1.8
2,159,000	+				-0.1
2,159,001	-				-1.8
2,159,001	-				+1.7
2,159,069	+	tgt	OKGIIK_10000	0.15	-0.9
2,159,069	+	tgt	OKGIIK_10000	0.15	+0.8
2,159,099	+	tgt	OKGIIK_10000	0.18	-1.1
2,159,099	+	tgt	OKGIIK_10000	0.18	-2.3
2,159,099	+	tgt	OKGIIK_10000	0.18	-1.4
2,159,100	-	tgt	OKGIIK_10000	0.18	+0.1
2,159,141	+	tgt	OKGIIK_10000	0.22	-1.8
2,159,141	+	tgt	OKGIIK_10000	0.22	+1.3
2,159,141	+	tgt	OKGIIK_10000	0.22	+0.9
2,159,141	+	tgt	OKGIIK_10000	0.22	+0.7
2,159,141	+	tgt	OKGIIK_10000	0.22	-1.1
2,159,141	+	tgt	OKGIIK_10000	0.22	-0.9
2,159,142	-	tgt	OKGIIK_10000	0.22	+1.4
2,159,142	-	tgt	OKGIIK_10000	0.22	-1.7
2,159,142	-	tgt	OKGIIK_10000	0.22	-2.6
2,159,142	-	tgt	OKGIIK_10000	0.22	-1.1
2,159,142	-	tgt	OKGIIK_10000	0.22	-2.3
2,159,288	+	tgt	OKGIIK_10000	0.34	-1.1
2,159,288	+	tgt	OKGIIK_10000	0.34	+0.9
2,159,288	+	tgt	OKGIIK_10000	0.34	-0.2
2,159,288	+	tgt	OKGIIK_10000	0.34	-1.8
2,159,289	-	tgt	OKGIIK_10000	0.35	+0.7
2,159,385	-	tgt	OKGIIK_10000	0.43	+0.7
2,159,385	-	tgt	OKGIIK_10000	0.43	-3.2
2,159,385	-	tgt	OKGIIK_10000	0.43	-1.7
2,159,441	+	tgt	OKGIIK_10000	0.48	-0.6
2,159,441	+	tgt	OKGIIK_10000	0.48	+0.1
2,159,441	+	tgt	OKGIIK_10000	0.48	-0.3
2,159,441	+	tgt	OKGIIK_10000	0.48	-1.7
2,159,442	-	tgt	OKGIIK_10000	0.48	-0.1
2,159,442	-	tgt	OKGIIK_10000	0.48	-0.7
2,159,924	+				-0.3
2,159,924	+				-0.9
2,159,925	-				+0.6
2,159,925	-				+0.1
2,159,925	-				+0.9
2,159,925	-				+0.7
2,159,925	-				-1.5
2,160,079	-				-1.0
2,160,079	-				-0.3
2,160,079	-				-0.3
2,160,079	-				+0.5
2,160,079	-				+0.7
2,160,079	-				+1.1
2,160,079	-				-2.2
2,160,079	-				-2.0
2,160,079	-				-0.7
2,160,079	-				+1.7
2,160,147	+				+0.5
2,160,147	+				-0.3
2,160,147	+				+1.7
2,160,599	+	queA	OKGIIK_10005	0.41	-0.4
2,160,600	-	queA	OKGIIK_10005	0.41	+0.2
2,160,600	-	queA	OKGIIK_10005	0.41	-0.7
2,160,711	-	queA	OKGIIK_10005	0.51	-0.6
2,160,711	-	queA	OKGIIK_10005	0.51	+0.2
2,160,749	+	queA	OKGIIK_10005	0.55	+0.3
2,160,749	+	queA	OKGIIK_10005	0.55	+0.3
2,160,749	+	queA	OKGIIK_10005	0.55	-1.5
2,160,749	+	queA	OKGIIK_10005	0.55	+0.9
2,160,750	-	queA	OKGIIK_10005	0.55	-0.1
2,160,750	-	queA	OKGIIK_10005	0.55	-0.1
2,160,750	-	queA	OKGIIK_10005	0.55	+0.1
2,160,750	-	queA	OKGIIK_10005	0.55	-0.3
2,160,993	-	queA	OKGIIK_10005	0.78	+0.8