Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_09625

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_09615 and OKGIIK_09620 overlap by 4 nucleotidesOKGIIK_09620 and fabG are separated by 19 nucleotidesfabG and OKGIIK_09630 are separated by 99 nucleotides OKGIIK_09615: OKGIIK_09615 - Maltose operon periplasmic protein precursor (MalM), at 2,080,323 to 2,081,147 _09615 OKGIIK_09620: OKGIIK_09620 - hypothetical protein, at 2,081,144 to 2,081,458 _09620 OKGIIK_09625: fabG - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 2,081,478 to 2,082,269 fabG OKGIIK_09630: OKGIIK_09630 - 2-hydroxymuconic semialdehyde dehydrogenase, at 2,082,369 to 2,083,856 _09630 Position (kb) 2081 2082 2083Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2080.599 kb on + strand, within OKGIIK_09615at 2080.599 kb on + strand, within OKGIIK_09615at 2080.599 kb on + strand, within OKGIIK_09615at 2080.599 kb on + strand, within OKGIIK_09615at 2080.599 kb on + strand, within OKGIIK_09615at 2080.599 kb on + strand, within OKGIIK_09615at 2080.599 kb on + strand, within OKGIIK_09615at 2080.599 kb on + strand, within OKGIIK_09615at 2080.599 kb on + strand, within OKGIIK_09615at 2080.599 kb on + strand, within OKGIIK_09615at 2080.599 kb on + strand, within OKGIIK_09615at 2080.599 kb on + strand, within OKGIIK_09615at 2080.599 kb on + strand, within OKGIIK_09615at 2080.600 kb on - strand, within OKGIIK_09615at 2080.600 kb on - strand, within OKGIIK_09615at 2080.600 kb on - strand, within OKGIIK_09615at 2080.600 kb on - strand, within OKGIIK_09615at 2080.600 kb on - strand, within OKGIIK_09615at 2080.600 kb on - strand, within OKGIIK_09615at 2080.600 kb on - strand, within OKGIIK_09615at 2080.600 kb on - strand, within OKGIIK_09615at 2080.600 kb on - strand, within OKGIIK_09615at 2080.600 kb on - strand, within OKGIIK_09615at 2080.600 kb on - strand, within OKGIIK_09615at 2080.600 kb on - strand, within OKGIIK_09615at 2080.600 kb on - strand, within OKGIIK_09615at 2080.600 kb on - strand, within OKGIIK_09615at 2080.600 kb on - strand, within OKGIIK_09615at 2080.600 kb on - strand, within OKGIIK_09615at 2080.600 kb on - strand, within OKGIIK_09615at 2080.600 kb on - strand, within OKGIIK_09615at 2080.600 kb on - strand, within OKGIIK_09615at 2080.600 kb on - strand, within OKGIIK_09615at 2080.692 kb on + strand, within OKGIIK_09615at 2080.692 kb on + strand, within OKGIIK_09615at 2080.692 kb on + strand, within OKGIIK_09615at 2080.692 kb on + strand, within OKGIIK_09615at 2080.693 kb on - strand, within OKGIIK_09615at 2080.693 kb on - strand, within OKGIIK_09615at 2080.693 kb on - strand, within OKGIIK_09615at 2080.693 kb on - strand, within OKGIIK_09615at 2080.693 kb on - strand, within OKGIIK_09615at 2080.693 kb on - strand, within OKGIIK_09615at 2080.839 kb on + strand, within OKGIIK_09615at 2080.839 kb on + strand, within OKGIIK_09615at 2080.839 kb on + strand, within OKGIIK_09615at 2080.839 kb on + strand, within OKGIIK_09615at 2080.840 kb on - strand, within OKGIIK_09615at 2080.840 kb on - strand, within OKGIIK_09615at 2080.851 kb on + strand, within OKGIIK_09615at 2080.851 kb on + strand, within OKGIIK_09615at 2080.851 kb on + strand, within OKGIIK_09615at 2080.851 kb on + strand, within OKGIIK_09615at 2080.851 kb on + strand, within OKGIIK_09615at 2080.851 kb on + strand, within OKGIIK_09615at 2080.851 kb on + strand, within OKGIIK_09615at 2080.852 kb on - strand, within OKGIIK_09615at 2080.852 kb on - strand, within OKGIIK_09615at 2080.852 kb on - strand, within OKGIIK_09615at 2080.852 kb on - strand, within OKGIIK_09615at 2080.852 kb on - strand, within OKGIIK_09615at 2080.852 kb on - strand, within OKGIIK_09615at 2080.884 kb on + strand, within OKGIIK_09615at 2080.884 kb on + strand, within OKGIIK_09615at 2080.884 kb on + strand, within OKGIIK_09615at 2080.884 kb on + strand, within OKGIIK_09615at 2080.884 kb on + strand, within OKGIIK_09615at 2080.884 kb on + strand, within OKGIIK_09615at 2080.884 kb on + strand, within OKGIIK_09615at 2080.884 kb on + strand, within OKGIIK_09615at 2080.884 kb on + strand, within OKGIIK_09615at 2080.884 kb on + strand, within OKGIIK_09615at 2080.884 kb on + strand, within OKGIIK_09615at 2080.884 kb on + strand, within OKGIIK_09615at 2080.884 kb on + strand, within OKGIIK_09615at 2080.885 kb on - strand, within OKGIIK_09615at 2080.885 kb on - strand, within OKGIIK_09615at 2080.885 kb on - strand, within OKGIIK_09615at 2081.013 kb on + strand, within OKGIIK_09615at 2081.013 kb on + strand, within OKGIIK_09615at 2081.013 kb on + strand, within OKGIIK_09615at 2081.013 kb on + strand, within OKGIIK_09615at 2081.014 kb on - strand, within OKGIIK_09615at 2081.156 kb on + strandat 2081.156 kb on + strandat 2081.156 kb on + strandat 2081.156 kb on + strandat 2081.156 kb on + strandat 2081.157 kb on - strandat 2081.157 kb on - strandat 2081.157 kb on - strandat 2081.157 kb on - strandat 2081.157 kb on - strandat 2081.201 kb on + strand, within OKGIIK_09620at 2081.201 kb on + strand, within OKGIIK_09620at 2081.201 kb on + strand, within OKGIIK_09620at 2081.201 kb on + strand, within OKGIIK_09620at 2081.202 kb on - strand, within OKGIIK_09620at 2081.202 kb on - strand, within OKGIIK_09620at 2081.202 kb on - strand, within OKGIIK_09620at 2081.202 kb on - strand, within OKGIIK_09620at 2081.202 kb on - strand, within OKGIIK_09620at 2081.385 kb on + strand, within OKGIIK_09620at 2081.385 kb on + strand, within OKGIIK_09620at 2081.385 kb on + strand, within OKGIIK_09620at 2081.385 kb on + strand, within OKGIIK_09620at 2081.385 kb on + strand, within OKGIIK_09620at 2081.385 kb on + strand, within OKGIIK_09620at 2081.385 kb on + strand, within OKGIIK_09620at 2081.386 kb on - strand, within OKGIIK_09620at 2081.386 kb on - strand, within OKGIIK_09620at 2081.393 kb on + strand, within OKGIIK_09620at 2081.394 kb on - strand, within OKGIIK_09620at 2081.415 kb on + strand, within OKGIIK_09620at 2081.415 kb on + strand, within OKGIIK_09620at 2081.415 kb on + strand, within OKGIIK_09620at 2081.415 kb on + strand, within OKGIIK_09620at 2081.416 kb on - strand, within OKGIIK_09620at 2081.416 kb on - strand, within OKGIIK_09620at 2081.416 kb on - strand, within OKGIIK_09620at 2081.416 kb on - strand, within OKGIIK_09620at 2081.735 kb on - strand, within fabGat 2081.735 kb on - strand, within fabGat 2081.735 kb on - strand, within fabGat 2081.735 kb on - strand, within fabGat 2081.883 kb on + strand, within fabGat 2081.944 kb on + strand, within fabGat 2082.042 kb on + strand, within fabGat 2082.042 kb on + strand, within fabGat 2082.042 kb on + strand, within fabGat 2082.042 kb on + strand, within fabGat 2082.043 kb on - strand, within fabGat 2082.043 kb on - strand, within fabGat 2082.213 kb on + strandat 2082.213 kb on + strandat 2082.213 kb on + strandat 2082.213 kb on + strandat 2082.213 kb on + strandat 2082.213 kb on + strandat 2082.213 kb on + strandat 2082.213 kb on + strandat 2082.213 kb on + strandat 2082.214 kb on - strandat 2082.214 kb on - strandat 2082.319 kb on + strandat 2082.319 kb on + strandat 2082.319 kb on + strandat 2082.320 kb on - strandat 2082.320 kb on - strandat 2082.320 kb on - strandat 2082.356 kb on + strandat 2082.356 kb on + strandat 2082.356 kb on + strandat 2082.356 kb on + strandat 2082.356 kb on + strandat 2082.357 kb on - strandat 2082.357 kb on - strandat 2082.357 kb on - strandat 2082.357 kb on - strandat 2082.357 kb on - strandat 2082.357 kb on - strandat 2082.357 kb on - strandat 2082.357 kb on - strandat 2082.385 kb on + strandat 2082.386 kb on - strandat 2082.551 kb on + strand, within OKGIIK_09630at 2082.551 kb on + strand, within OKGIIK_09630at 2082.551 kb on + strand, within OKGIIK_09630at 2082.708 kb on + strand, within OKGIIK_09630at 2082.708 kb on + strand, within OKGIIK_09630at 2082.708 kb on + strand, within OKGIIK_09630at 2082.708 kb on + strand, within OKGIIK_09630at 2082.708 kb on + strand, within OKGIIK_09630at 2082.789 kb on + strand, within OKGIIK_09630at 2082.789 kb on + strand, within OKGIIK_09630at 2082.789 kb on + strand, within OKGIIK_09630at 2082.789 kb on + strand, within OKGIIK_09630at 2082.789 kb on + strand, within OKGIIK_09630at 2082.789 kb on + strand, within OKGIIK_09630at 2082.789 kb on + strand, within OKGIIK_09630at 2082.789 kb on + strand, within OKGIIK_09630at 2082.789 kb on + strand, within OKGIIK_09630at 2082.789 kb on + strand, within OKGIIK_09630at 2082.789 kb on + strand, within OKGIIK_09630at 2082.789 kb on + strand, within OKGIIK_09630at 2082.789 kb on + strand, within OKGIIK_09630at 2082.789 kb on + strand, within OKGIIK_09630at 2082.789 kb on + strand, within OKGIIK_09630at 2082.789 kb on + strand, within OKGIIK_09630at 2082.849 kb on + strand, within OKGIIK_09630at 2082.849 kb on + strand, within OKGIIK_09630at 2082.849 kb on + strand, within OKGIIK_09630at 2082.849 kb on + strand, within OKGIIK_09630at 2082.849 kb on + strand, within OKGIIK_09630at 2082.849 kb on + strand, within OKGIIK_09630

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
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2,080,599 + OKGIIK_09615 0.33 -0.9
2,080,599 + OKGIIK_09615 0.33 -2.1
2,080,599 + OKGIIK_09615 0.33 -0.6
2,080,599 + OKGIIK_09615 0.33 -1.1
2,080,599 + OKGIIK_09615 0.33 -1.7
2,080,599 + OKGIIK_09615 0.33 -1.9
2,080,599 + OKGIIK_09615 0.33 +0.4
2,080,599 + OKGIIK_09615 0.33 +0.1
2,080,599 + OKGIIK_09615 0.33 +0.5
2,080,599 + OKGIIK_09615 0.33 +0.3
2,080,599 + OKGIIK_09615 0.33 -0.5
2,080,599 + OKGIIK_09615 0.33 -0.3
2,080,599 + OKGIIK_09615 0.33 -0.1
2,080,600 - OKGIIK_09615 0.34 -1.1
2,080,600 - OKGIIK_09615 0.34 -2.6
2,080,600 - OKGIIK_09615 0.34 +0.9
2,080,600 - OKGIIK_09615 0.34 -0.9
2,080,600 - OKGIIK_09615 0.34 -1.7
2,080,600 - OKGIIK_09615 0.34 -0.6
2,080,600 - OKGIIK_09615 0.34 +0.5
2,080,600 - OKGIIK_09615 0.34 -0.0
2,080,600 - OKGIIK_09615 0.34 +0.7
2,080,600 - OKGIIK_09615 0.34 +0.2
2,080,600 - OKGIIK_09615 0.34 +0.9
2,080,600 - OKGIIK_09615 0.34 -0.9
2,080,600 - OKGIIK_09615 0.34 -0.8
2,080,600 - OKGIIK_09615 0.34 +0.4
2,080,600 - OKGIIK_09615 0.34 +0.4
2,080,600 - OKGIIK_09615 0.34 +2.9
2,080,600 - OKGIIK_09615 0.34 +1.7
2,080,600 - OKGIIK_09615 0.34 +0.4
2,080,600 - OKGIIK_09615 0.34 -1.1
2,080,600 - OKGIIK_09615 0.34 -0.8
2,080,692 + OKGIIK_09615 0.45 -1.2
2,080,692 + OKGIIK_09615 0.45 +0.7
2,080,692 + OKGIIK_09615 0.45 +0.5
2,080,692 + OKGIIK_09615 0.45 -1.0
2,080,693 - OKGIIK_09615 0.45 -1.2
2,080,693 - OKGIIK_09615 0.45 +0.9
2,080,693 - OKGIIK_09615 0.45 -1.5
2,080,693 - OKGIIK_09615 0.45 -1.5
2,080,693 - OKGIIK_09615 0.45 +1.3
2,080,693 - OKGIIK_09615 0.45 -0.8
2,080,839 + OKGIIK_09615 0.63 -1.1
2,080,839 + OKGIIK_09615 0.63 -0.2
2,080,839 + OKGIIK_09615 0.63 -0.3
2,080,839 + OKGIIK_09615 0.63 -0.0
2,080,840 - OKGIIK_09615 0.63 +0.1
2,080,840 - OKGIIK_09615 0.63 -0.5
2,080,851 + OKGIIK_09615 0.64 -1.5
2,080,851 + OKGIIK_09615 0.64 -1.3
2,080,851 + OKGIIK_09615 0.64 -1.1
2,080,851 + OKGIIK_09615 0.64 -0.6
2,080,851 + OKGIIK_09615 0.64 -1.3
2,080,851 + OKGIIK_09615 0.64 +1.3
2,080,851 + OKGIIK_09615 0.64 +0.9
2,080,852 - OKGIIK_09615 0.64 +0.3
2,080,852 - OKGIIK_09615 0.64 -0.3
2,080,852 - OKGIIK_09615 0.64 -0.8
2,080,852 - OKGIIK_09615 0.64 +0.6
2,080,852 - OKGIIK_09615 0.64 +1.2
2,080,852 - OKGIIK_09615 0.64 -1.3
2,080,884 + OKGIIK_09615 0.68 -0.1
2,080,884 + OKGIIK_09615 0.68 -2.7
2,080,884 + OKGIIK_09615 0.68 +2.0
2,080,884 + OKGIIK_09615 0.68 -0.6
2,080,884 + OKGIIK_09615 0.68 -0.1
2,080,884 + OKGIIK_09615 0.68 -0.7
2,080,884 + OKGIIK_09615 0.68 +1.4
2,080,884 + OKGIIK_09615 0.68 -2.7
2,080,884 + OKGIIK_09615 0.68 +0.8
2,080,884 + OKGIIK_09615 0.68 +1.0
2,080,884 + OKGIIK_09615 0.68 -0.9
2,080,884 + OKGIIK_09615 0.68 -0.7
2,080,884 + OKGIIK_09615 0.68 -0.3
2,080,885 - OKGIIK_09615 0.68 -0.3
2,080,885 - OKGIIK_09615 0.68 -0.3
2,080,885 - OKGIIK_09615 0.68 +0.1
2,081,013 + OKGIIK_09615 0.84 +1.2
2,081,013 + OKGIIK_09615 0.84 -0.1
2,081,013 + OKGIIK_09615 0.84 -0.3
2,081,013 + OKGIIK_09615 0.84 -0.3
2,081,014 - OKGIIK_09615 0.84 -2.3
2,081,156 + -1.1
2,081,156 + +0.7
2,081,156 + +0.5
2,081,156 + -0.7
2,081,156 + +0.6
2,081,157 - +0.5
2,081,157 - -2.6
2,081,157 - -0.1
2,081,157 - -0.3
2,081,157 - +1.4
2,081,201 + OKGIIK_09620 0.18 +0.1
2,081,201 + OKGIIK_09620 0.18 -1.1
2,081,201 + OKGIIK_09620 0.18 -2.2
2,081,201 + OKGIIK_09620 0.18 +0.2
2,081,202 - OKGIIK_09620 0.18 +0.2
2,081,202 - OKGIIK_09620 0.18 -2.5
2,081,202 - OKGIIK_09620 0.18 -0.7
2,081,202 - OKGIIK_09620 0.18 -2.1
2,081,202 - OKGIIK_09620 0.18 +0.3
2,081,385 + OKGIIK_09620 0.77 -0.7
2,081,385 + OKGIIK_09620 0.77 -1.2
2,081,385 + OKGIIK_09620 0.77 +1.1
2,081,385 + OKGIIK_09620 0.77 -0.9
2,081,385 + OKGIIK_09620 0.77 +0.2
2,081,385 + OKGIIK_09620 0.77 -1.7
2,081,385 + OKGIIK_09620 0.77 -1.9
2,081,386 - OKGIIK_09620 0.77 -1.8
2,081,386 - OKGIIK_09620 0.77 -0.6
2,081,393 + OKGIIK_09620 0.79 -0.4
2,081,394 - OKGIIK_09620 0.79 -0.7
2,081,415 + OKGIIK_09620 0.86 -1.0
2,081,415 + OKGIIK_09620 0.86 -0.5
2,081,415 + OKGIIK_09620 0.86 -0.9
2,081,415 + OKGIIK_09620 0.86 +1.4
2,081,416 - OKGIIK_09620 0.86 -1.7
2,081,416 - OKGIIK_09620 0.86 +1.7
2,081,416 - OKGIIK_09620 0.86 -0.7
2,081,416 - OKGIIK_09620 0.86 -0.3
2,081,735 - fabG OKGIIK_09625 0.32 -2.1
2,081,735 - fabG OKGIIK_09625 0.32 +0.1
2,081,735 - fabG OKGIIK_09625 0.32 -1.1
2,081,735 - fabG OKGIIK_09625 0.32 -0.3
2,081,883 + fabG OKGIIK_09625 0.51 -0.5
2,081,944 + fabG OKGIIK_09625 0.59 +1.0
2,082,042 + fabG OKGIIK_09625 0.71 -0.9
2,082,042 + fabG OKGIIK_09625 0.71 -1.3
2,082,042 + fabG OKGIIK_09625 0.71 -1.2
2,082,042 + fabG OKGIIK_09625 0.71 -1.2
2,082,043 - fabG OKGIIK_09625 0.71 +0.9
2,082,043 - fabG OKGIIK_09625 0.71 -1.3
2,082,213 + +0.6
2,082,213 + +0.2
2,082,213 + +0.9
2,082,213 + -1.8
2,082,213 + -1.1
2,082,213 + -0.9
2,082,213 + +0.7
2,082,213 + -2.0
2,082,213 + +1.2
2,082,214 - +1.1
2,082,214 - +0.2
2,082,319 + -0.9
2,082,319 + -4.6
2,082,319 + -0.1
2,082,320 - -0.3
2,082,320 - +1.2
2,082,320 - +0.3
2,082,356 + +0.5
2,082,356 + +0.6
2,082,356 + +0.1
2,082,356 + -0.3
2,082,356 + -0.7
2,082,357 - -0.1
2,082,357 - +0.4
2,082,357 - -1.1
2,082,357 - -0.9
2,082,357 - +0.1
2,082,357 - +0.7
2,082,357 - -0.7
2,082,357 - -2.5
2,082,385 + -1.6
2,082,386 - -1.3
2,082,551 + OKGIIK_09630 0.12 -1.7
2,082,551 + OKGIIK_09630 0.12 -0.3
2,082,551 + OKGIIK_09630 0.12 -0.8
2,082,708 + OKGIIK_09630 0.23 -1.3
2,082,708 + OKGIIK_09630 0.23 +1.7
2,082,708 + OKGIIK_09630 0.23 -0.7
2,082,708 + OKGIIK_09630 0.23 +0.2
2,082,708 + OKGIIK_09630 0.23 -0.9
2,082,789 + OKGIIK_09630 0.28 -0.1
2,082,789 + OKGIIK_09630 0.28 +0.7
2,082,789 + OKGIIK_09630 0.28 -0.3
2,082,789 + OKGIIK_09630 0.28 -0.4
2,082,789 + OKGIIK_09630 0.28 -0.6
2,082,789 + OKGIIK_09630 0.28 -0.3
2,082,789 + OKGIIK_09630 0.28 -0.2
2,082,789 + OKGIIK_09630 0.28 -0.5
2,082,789 + OKGIIK_09630 0.28 +0.2
2,082,789 + OKGIIK_09630 0.28 +0.2
2,082,789 + OKGIIK_09630 0.28 +0.6
2,082,789 + OKGIIK_09630 0.28 +0.1
2,082,789 + OKGIIK_09630 0.28 +0.3
2,082,789 + OKGIIK_09630 0.28 +1.3
2,082,789 + OKGIIK_09630 0.28 +0.7
2,082,789 + OKGIIK_09630 0.28 -0.3
2,082,849 + OKGIIK_09630 0.32 -0.0
2,082,849 + OKGIIK_09630 0.32 -0.2
2,082,849 + OKGIIK_09630 0.32 -0.4
2,082,849 + OKGIIK_09630 0.32 -0.2
2,082,849 + OKGIIK_09630 0.32 -0.5
2,082,849 + OKGIIK_09630 0.32 -0.3

Or see this region's nucleotide sequence