Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08845

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_08830 and OKGIIK_08835 are separated by 140 nucleotidesOKGIIK_08835 and OKGIIK_08840 are separated by 3 nucleotidesOKGIIK_08840 and OKGIIK_08845 overlap by 4 nucleotidesOKGIIK_08845 and OKGIIK_08850 overlap by 4 nucleotidesOKGIIK_08850 and OKGIIK_08855 overlap by 4 nucleotidesOKGIIK_08855 and OKGIIK_08860 overlap by 4 nucleotidesOKGIIK_08860 and OKGIIK_08865 overlap by 4 nucleotides OKGIIK_08830: OKGIIK_08830 - hypothetical protein, at 1,912,078 to 1,912,368 _08830 OKGIIK_08835: OKGIIK_08835 - hypothetical protein, at 1,912,509 to 1,912,715 _08835 OKGIIK_08840: OKGIIK_08840 - hypothetical protein, at 1,912,719 to 1,912,967 _08840 OKGIIK_08845: OKGIIK_08845 - hypothetical protein, at 1,912,964 to 1,913,365 _08845 OKGIIK_08850: OKGIIK_08850 - hypothetical protein, at 1,913,362 to 1,913,688 _08850 OKGIIK_08855: OKGIIK_08855 - hypothetical protein, at 1,913,685 to 1,913,936 _08855 OKGIIK_08860: OKGIIK_08860 - hypothetical protein, at 1,913,933 to 1,914,229 _08860 OKGIIK_08865: OKGIIK_08865 - hypothetical protein, at 1,914,226 to 1,914,627 _08865 Position (kb) 1912 1913 1914Strain fitness (log2 ratio) -2 -1 0 1at 1911.964 kb on - strandat 1911.964 kb on - strandat 1911.971 kb on + strandat 1911.971 kb on + strandat 1911.972 kb on - strandat 1911.972 kb on - strandat 1912.056 kb on + strandat 1912.056 kb on + strandat 1912.057 kb on - strandat 1912.057 kb on - strandat 1912.177 kb on + strand, within OKGIIK_08830at 1912.177 kb on + strand, within OKGIIK_08830at 1912.177 kb on + strand, within OKGIIK_08830at 1912.178 kb on - strand, within OKGIIK_08830at 1912.178 kb on - strand, within OKGIIK_08830at 1912.178 kb on - strand, within OKGIIK_08830at 1912.192 kb on + strand, within OKGIIK_08830at 1912.192 kb on + strand, within OKGIIK_08830at 1912.192 kb on + strand, within OKGIIK_08830at 1912.192 kb on + strand, within OKGIIK_08830at 1912.192 kb on + strand, within OKGIIK_08830at 1912.192 kb on + strand, within OKGIIK_08830at 1912.192 kb on + strand, within OKGIIK_08830at 1912.193 kb on - strand, within OKGIIK_08830at 1912.210 kb on + strand, within OKGIIK_08830at 1912.210 kb on + strand, within OKGIIK_08830at 1912.210 kb on + strand, within OKGIIK_08830at 1912.211 kb on - strand, within OKGIIK_08830at 1912.211 kb on - strand, within OKGIIK_08830at 1912.211 kb on - strand, within OKGIIK_08830at 1912.211 kb on - strand, within OKGIIK_08830at 1912.222 kb on + strand, within OKGIIK_08830at 1912.222 kb on + strand, within OKGIIK_08830at 1912.222 kb on + strand, within OKGIIK_08830at 1912.223 kb on - strand, within OKGIIK_08830at 1912.243 kb on + strand, within OKGIIK_08830at 1912.243 kb on + strand, within OKGIIK_08830at 1912.243 kb on + strand, within OKGIIK_08830at 1912.243 kb on + strand, within OKGIIK_08830at 1912.243 kb on + strand, within OKGIIK_08830at 1912.243 kb on + strand, within OKGIIK_08830at 1912.243 kb on + strand, within OKGIIK_08830at 1912.243 kb on + strand, within OKGIIK_08830at 1912.243 kb on + strand, within OKGIIK_08830at 1912.243 kb on + strand, within OKGIIK_08830at 1912.243 kb on + strand, within OKGIIK_08830at 1912.244 kb on - strand, within OKGIIK_08830at 1912.244 kb on - strand, within OKGIIK_08830at 1912.244 kb on - strand, within OKGIIK_08830at 1912.244 kb on - strand, within OKGIIK_08830at 1912.244 kb on - strand, within OKGIIK_08830at 1912.244 kb on - strand, within OKGIIK_08830at 1912.244 kb on - strand, within OKGIIK_08830at 1912.602 kb on + strand, within OKGIIK_08835at 1912.602 kb on + strand, within OKGIIK_08835at 1912.602 kb on + strand, within OKGIIK_08835at 1912.602 kb on + strand, within OKGIIK_08835at 1912.602 kb on + strand, within OKGIIK_08835at 1912.602 kb on + strand, within OKGIIK_08835at 1912.602 kb on + strand, within OKGIIK_08835at 1912.602 kb on + strand, within OKGIIK_08835at 1912.602 kb on + strand, within OKGIIK_08835at 1912.602 kb on + strand, within OKGIIK_08835at 1912.602 kb on + strand, within OKGIIK_08835at 1912.602 kb on + strand, within OKGIIK_08835at 1912.603 kb on - strand, within OKGIIK_08835at 1912.603 kb on - strand, within OKGIIK_08835at 1912.603 kb on - strand, within OKGIIK_08835at 1912.603 kb on - strand, within OKGIIK_08835at 1912.603 kb on - strand, within OKGIIK_08835at 1912.603 kb on - strand, within OKGIIK_08835at 1912.603 kb on - strand, within OKGIIK_08835at 1912.603 kb on - strand, within OKGIIK_08835at 1912.603 kb on - strand, within OKGIIK_08835at 1912.603 kb on - strand, within OKGIIK_08835at 1912.603 kb on - strand, within OKGIIK_08835at 1912.603 kb on - strand, within OKGIIK_08835at 1912.603 kb on - strand, within OKGIIK_08835at 1912.603 kb on - strand, within OKGIIK_08835at 1912.603 kb on - strand, within OKGIIK_08835at 1912.603 kb on - strand, within OKGIIK_08835at 1912.722 kb on + strandat 1912.722 kb on + strandat 1912.722 kb on + strandat 1912.722 kb on + strandat 1912.722 kb on + strandat 1912.722 kb on + strandat 1912.722 kb on + strandat 1912.722 kb on + strandat 1912.722 kb on + strandat 1912.722 kb on + strandat 1912.722 kb on + strandat 1912.722 kb on + strandat 1912.722 kb on + strandat 1912.722 kb on + strandat 1912.722 kb on + strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.764 kb on + strand, within OKGIIK_08840at 1913.037 kb on - strand, within OKGIIK_08845at 1913.037 kb on - strand, within OKGIIK_08845at 1913.037 kb on - strand, within OKGIIK_08845at 1913.144 kb on + strand, within OKGIIK_08845at 1913.145 kb on - strand, within OKGIIK_08845at 1913.186 kb on - strand, within OKGIIK_08845at 1913.186 kb on - strand, within OKGIIK_08845at 1913.219 kb on + strand, within OKGIIK_08845at 1913.220 kb on - strand, within OKGIIK_08845at 1913.220 kb on - strand, within OKGIIK_08845at 1913.220 kb on - strand, within OKGIIK_08845at 1913.220 kb on - strand, within OKGIIK_08845at 1913.220 kb on - strand, within OKGIIK_08845at 1913.220 kb on - strand, within OKGIIK_08845at 1913.837 kb on - strand, within OKGIIK_08855at 1913.837 kb on - strand, within OKGIIK_08855at 1913.890 kb on - strand, within OKGIIK_08855at 1913.890 kb on - strand, within OKGIIK_08855at 1913.890 kb on - strand, within OKGIIK_08855at 1913.890 kb on - strand, within OKGIIK_08855at 1913.890 kb on - strand, within OKGIIK_08855at 1913.985 kb on + strand, within OKGIIK_08860at 1913.986 kb on - strand, within OKGIIK_08860at 1913.986 kb on - strand, within OKGIIK_08860at 1913.986 kb on - strand, within OKGIIK_08860at 1914.141 kb on + strand, within OKGIIK_08860at 1914.142 kb on - strand, within OKGIIK_08860at 1914.161 kb on - strand, within OKGIIK_08860at 1914.275 kb on - strand, within OKGIIK_08865

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
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1,911,964 - -1.1
1,911,964 - -0.7
1,911,971 + -0.6
1,911,971 + +0.5
1,911,972 - +0.4
1,911,972 - -0.6
1,912,056 + -0.1
1,912,056 + +0.4
1,912,057 - -1.4
1,912,057 - +0.4
1,912,177 + OKGIIK_08830 0.34 +0.5
1,912,177 + OKGIIK_08830 0.34 -0.2
1,912,177 + OKGIIK_08830 0.34 +1.2
1,912,178 - OKGIIK_08830 0.34 -1.2
1,912,178 - OKGIIK_08830 0.34 +1.0
1,912,178 - OKGIIK_08830 0.34 -0.1
1,912,192 + OKGIIK_08830 0.39 +0.0
1,912,192 + OKGIIK_08830 0.39 -0.2
1,912,192 + OKGIIK_08830 0.39 +1.4
1,912,192 + OKGIIK_08830 0.39 -2.3
1,912,192 + OKGIIK_08830 0.39 +0.5
1,912,192 + OKGIIK_08830 0.39 -1.0
1,912,192 + OKGIIK_08830 0.39 -0.4
1,912,193 - OKGIIK_08830 0.40 +0.5
1,912,210 + OKGIIK_08830 0.45 -0.6
1,912,210 + OKGIIK_08830 0.45 -0.2
1,912,210 + OKGIIK_08830 0.45 -1.6
1,912,211 - OKGIIK_08830 0.46 -1.2
1,912,211 - OKGIIK_08830 0.46 -1.2
1,912,211 - OKGIIK_08830 0.46 -1.4
1,912,211 - OKGIIK_08830 0.46 +0.2
1,912,222 + OKGIIK_08830 0.49 -0.8
1,912,222 + OKGIIK_08830 0.49 +0.9
1,912,222 + OKGIIK_08830 0.49 +0.8
1,912,223 - OKGIIK_08830 0.50 +0.5
1,912,243 + OKGIIK_08830 0.57 -1.0
1,912,243 + OKGIIK_08830 0.57 -1.2
1,912,243 + OKGIIK_08830 0.57 -0.6
1,912,243 + OKGIIK_08830 0.57 -1.6
1,912,243 + OKGIIK_08830 0.57 -1.5
1,912,243 + OKGIIK_08830 0.57 -0.6
1,912,243 + OKGIIK_08830 0.57 -2.1
1,912,243 + OKGIIK_08830 0.57 +0.6
1,912,243 + OKGIIK_08830 0.57 -0.6
1,912,243 + OKGIIK_08830 0.57 +1.0
1,912,243 + OKGIIK_08830 0.57 -2.2
1,912,244 - OKGIIK_08830 0.57 -0.4
1,912,244 - OKGIIK_08830 0.57 -0.3
1,912,244 - OKGIIK_08830 0.57 +1.5
1,912,244 - OKGIIK_08830 0.57 -0.6
1,912,244 - OKGIIK_08830 0.57 +1.4
1,912,244 - OKGIIK_08830 0.57 +0.5
1,912,244 - OKGIIK_08830 0.57 -0.8
1,912,602 + OKGIIK_08835 0.45 -0.6
1,912,602 + OKGIIK_08835 0.45 +0.0
1,912,602 + OKGIIK_08835 0.45 -1.0
1,912,602 + OKGIIK_08835 0.45 -0.6
1,912,602 + OKGIIK_08835 0.45 +0.0
1,912,602 + OKGIIK_08835 0.45 -1.9
1,912,602 + OKGIIK_08835 0.45 -0.6
1,912,602 + OKGIIK_08835 0.45 -0.9
1,912,602 + OKGIIK_08835 0.45 -0.6
1,912,602 + OKGIIK_08835 0.45 -1.6
1,912,602 + OKGIIK_08835 0.45 -0.6
1,912,602 + OKGIIK_08835 0.45 -0.6
1,912,603 - OKGIIK_08835 0.45 +0.5
1,912,603 - OKGIIK_08835 0.45 -0.8
1,912,603 - OKGIIK_08835 0.45 -0.6
1,912,603 - OKGIIK_08835 0.45 -1.0
1,912,603 - OKGIIK_08835 0.45 -1.1
1,912,603 - OKGIIK_08835 0.45 -0.4
1,912,603 - OKGIIK_08835 0.45 +0.9
1,912,603 - OKGIIK_08835 0.45 -1.8
1,912,603 - OKGIIK_08835 0.45 -0.1
1,912,603 - OKGIIK_08835 0.45 +0.4
1,912,603 - OKGIIK_08835 0.45 -0.6
1,912,603 - OKGIIK_08835 0.45 -2.7
1,912,603 - OKGIIK_08835 0.45 -2.0
1,912,603 - OKGIIK_08835 0.45 +0.2
1,912,603 - OKGIIK_08835 0.45 -1.4
1,912,603 - OKGIIK_08835 0.45 -1.8
1,912,722 + -1.4
1,912,722 + -2.7
1,912,722 + +0.4
1,912,722 + -1.0
1,912,722 + -0.6
1,912,722 + +0.6
1,912,722 + -1.6
1,912,722 + -0.0
1,912,722 + -0.1
1,912,722 + +0.1
1,912,722 + +0.4
1,912,722 + -0.6
1,912,722 + +0.4
1,912,722 + +0.4
1,912,722 + -1.4
1,912,723 - -0.6
1,912,723 - -0.1
1,912,723 - -1.4
1,912,723 - -0.7
1,912,723 - -1.0
1,912,723 - -1.0
1,912,723 - -1.0
1,912,723 - -0.5
1,912,723 - -1.0
1,912,723 - -1.6
1,912,723 - -1.1
1,912,723 - -0.7
1,912,723 - -1.0
1,912,723 - -1.2
1,912,723 - +1.5
1,912,723 - -0.4
1,912,723 - +0.6
1,912,723 - -0.3
1,912,723 - +0.1
1,912,723 - +1.1
1,912,764 + OKGIIK_08840 0.18 +0.6
1,913,037 - OKGIIK_08845 0.18 -0.2
1,913,037 - OKGIIK_08845 0.18 -2.3
1,913,037 - OKGIIK_08845 0.18 +0.7
1,913,144 + OKGIIK_08845 0.45 -1.4
1,913,145 - OKGIIK_08845 0.45 -0.4
1,913,186 - OKGIIK_08845 0.55 -1.6
1,913,186 - OKGIIK_08845 0.55 -2.3
1,913,219 + OKGIIK_08845 0.63 -1.1
1,913,220 - OKGIIK_08845 0.64 +0.5
1,913,220 - OKGIIK_08845 0.64 -1.0
1,913,220 - OKGIIK_08845 0.64 -1.4
1,913,220 - OKGIIK_08845 0.64 +0.9
1,913,220 - OKGIIK_08845 0.64 +1.4
1,913,220 - OKGIIK_08845 0.64 -0.2
1,913,837 - OKGIIK_08855 0.60 +1.4
1,913,837 - OKGIIK_08855 0.60 -1.8
1,913,890 - OKGIIK_08855 0.81 -0.6
1,913,890 - OKGIIK_08855 0.81 +0.2
1,913,890 - OKGIIK_08855 0.81 +0.1
1,913,890 - OKGIIK_08855 0.81 -0.7
1,913,890 - OKGIIK_08855 0.81 -1.6
1,913,985 + OKGIIK_08860 0.18 -0.6
1,913,986 - OKGIIK_08860 0.18 -1.0
1,913,986 - OKGIIK_08860 0.18 +1.6
1,913,986 - OKGIIK_08860 0.18 -1.0
1,914,141 + OKGIIK_08860 0.70 -1.0
1,914,142 - OKGIIK_08860 0.70 +0.6
1,914,161 - OKGIIK_08860 0.77 -1.4
1,914,275 - OKGIIK_08865 0.12 -1.0

Or see this region's nucleotide sequence