Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08430

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthutI and lpxK overlap by 15 nucleotideslpxK and msbA are separated by 10 nucleotides OKGIIK_08425: hutI - imidazolonepropionase, at 1,846,691 to 1,847,920 hutI OKGIIK_08430: lpxK - tetraacyldisaccharide 4'-kinase, at 1,847,906 to 1,848,889 lpxK OKGIIK_08435: msbA - lipid A export permease/ATP-binding protein MsbA, at 1,848,900 to 1,850,684 msbA Position (kb) 1847 1848 1849Strain fitness (log2 ratio) -2 -1 0 1at 1846.916 kb on - strand, within hutIat 1846.979 kb on + strand, within hutIat 1846.979 kb on + strand, within hutIat 1846.979 kb on + strand, within hutIat 1846.979 kb on + strand, within hutIat 1847.246 kb on + strand, within hutIat 1847.246 kb on + strand, within hutIat 1847.267 kb on + strand, within hutIat 1847.267 kb on + strand, within hutIat 1847.267 kb on + strand, within hutIat 1847.267 kb on + strand, within hutIat 1847.267 kb on + strand, within hutIat 1847.267 kb on + strand, within hutIat 1847.267 kb on + strand, within hutIat 1847.267 kb on + strand, within hutIat 1847.267 kb on + strand, within hutIat 1847.267 kb on + strand, within hutIat 1847.267 kb on + strand, within hutIat 1847.268 kb on - strand, within hutIat 1847.268 kb on - strand, within hutIat 1847.268 kb on - strand, within hutIat 1847.268 kb on - strand, within hutIat 1847.268 kb on - strand, within hutIat 1847.268 kb on - strand, within hutIat 1847.573 kb on + strand, within hutIat 1847.573 kb on + strand, within hutIat 1847.573 kb on + strand, within hutIat 1847.574 kb on - strand, within hutIat 1847.574 kb on - strand, within hutIat 1847.574 kb on - strand, within hutIat 1847.574 kb on - strand, within hutIat 1847.574 kb on - strand, within hutIat 1847.858 kb on + strandat 1847.880 kb on + strandat 1847.880 kb on + strandat 1847.880 kb on + strandat 1847.916 kb on + strandat 1847.917 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
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1,846,916 - hutI OKGIIK_08425 0.18 +0.3
1,846,979 + hutI OKGIIK_08425 0.23 +0.5
1,846,979 + hutI OKGIIK_08425 0.23 -0.8
1,846,979 + hutI OKGIIK_08425 0.23 +0.7
1,846,979 + hutI OKGIIK_08425 0.23 +1.3
1,847,246 + hutI OKGIIK_08425 0.45 +0.5
1,847,246 + hutI OKGIIK_08425 0.45 +0.3
1,847,267 + hutI OKGIIK_08425 0.47 -0.0
1,847,267 + hutI OKGIIK_08425 0.47 -0.4
1,847,267 + hutI OKGIIK_08425 0.47 +0.3
1,847,267 + hutI OKGIIK_08425 0.47 +0.3
1,847,267 + hutI OKGIIK_08425 0.47 -0.8
1,847,267 + hutI OKGIIK_08425 0.47 -0.4
1,847,267 + hutI OKGIIK_08425 0.47 -0.7
1,847,267 + hutI OKGIIK_08425 0.47 -0.4
1,847,267 + hutI OKGIIK_08425 0.47 +0.6
1,847,267 + hutI OKGIIK_08425 0.47 -0.4
1,847,267 + hutI OKGIIK_08425 0.47 -0.2
1,847,268 - hutI OKGIIK_08425 0.47 -1.4
1,847,268 - hutI OKGIIK_08425 0.47 -0.9
1,847,268 - hutI OKGIIK_08425 0.47 -1.4
1,847,268 - hutI OKGIIK_08425 0.47 +1.1
1,847,268 - hutI OKGIIK_08425 0.47 +1.1
1,847,268 - hutI OKGIIK_08425 0.47 -0.9
1,847,573 + hutI OKGIIK_08425 0.72 +1.1
1,847,573 + hutI OKGIIK_08425 0.72 +0.6
1,847,573 + hutI OKGIIK_08425 0.72 -2.6
1,847,574 - hutI OKGIIK_08425 0.72 +0.2
1,847,574 - hutI OKGIIK_08425 0.72 -1.9
1,847,574 - hutI OKGIIK_08425 0.72 -0.4
1,847,574 - hutI OKGIIK_08425 0.72 -0.4
1,847,574 - hutI OKGIIK_08425 0.72 -0.4
1,847,858 + -0.4
1,847,880 + +0.1
1,847,880 + -0.5
1,847,880 + -1.2
1,847,916 + +0.8
1,847,917 - -1.4

Or see this region's nucleotide sequence