Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08420

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyhbS and OKGIIK_08420 are separated by 25 nucleotidesOKGIIK_08420 and hutI are separated by 25 nucleotides OKGIIK_08415: yhbS - carbon-nitrogen hydrolase, at 1,843,548 to 1,845,170 yhbS OKGIIK_08420: OKGIIK_08420 - Chloride channel protein, at 1,845,196 to 1,846,665 _08420 OKGIIK_08425: hutI - imidazolonepropionase, at 1,846,691 to 1,847,920 hutI Position (kb) 1845 1846 1847Strain fitness (log2 ratio) -2 -1 0 1 2at 1844.325 kb on + strand, within yhbSat 1844.325 kb on + strand, within yhbSat 1844.325 kb on + strand, within yhbSat 1844.326 kb on - strand, within yhbSat 1844.326 kb on - strand, within yhbSat 1844.326 kb on - strand, within yhbSat 1844.326 kb on - strand, within yhbSat 1844.326 kb on - strand, within yhbSat 1844.376 kb on + strand, within yhbSat 1844.376 kb on + strand, within yhbSat 1844.376 kb on + strand, within yhbSat 1844.376 kb on + strand, within yhbSat 1844.376 kb on + strand, within yhbSat 1844.377 kb on - strand, within yhbSat 1844.377 kb on - strand, within yhbSat 1844.377 kb on - strand, within yhbSat 1844.377 kb on - strand, within yhbSat 1844.377 kb on - strand, within yhbSat 1844.400 kb on + strand, within yhbSat 1844.400 kb on + strand, within yhbSat 1844.401 kb on - strand, within yhbSat 1844.401 kb on - strand, within yhbSat 1844.401 kb on - strand, within yhbSat 1844.505 kb on + strand, within yhbSat 1844.506 kb on - strand, within yhbSat 1844.506 kb on - strand, within yhbSat 1844.550 kb on + strand, within yhbSat 1844.550 kb on + strand, within yhbSat 1844.550 kb on + strand, within yhbSat 1844.550 kb on + strand, within yhbSat 1844.550 kb on + strand, within yhbSat 1844.551 kb on - strand, within yhbSat 1844.551 kb on - strand, within yhbSat 1844.551 kb on - strand, within yhbSat 1844.551 kb on - strand, within yhbSat 1844.551 kb on - strand, within yhbSat 1844.551 kb on - strand, within yhbSat 1844.551 kb on - strand, within yhbSat 1844.619 kb on + strand, within yhbSat 1844.619 kb on + strand, within yhbSat 1844.619 kb on + strand, within yhbSat 1844.619 kb on + strand, within yhbSat 1844.619 kb on + strand, within yhbSat 1844.619 kb on + strand, within yhbSat 1844.619 kb on + strand, within yhbSat 1844.619 kb on + strand, within yhbSat 1844.619 kb on + strand, within yhbSat 1844.619 kb on + strand, within yhbSat 1844.619 kb on + strand, within yhbSat 1844.619 kb on + strand, within yhbSat 1844.619 kb on + strand, within yhbSat 1844.620 kb on - strand, within yhbSat 1844.620 kb on - strand, within yhbSat 1844.620 kb on - strand, within yhbSat 1844.620 kb on - strand, within yhbSat 1844.620 kb on - strand, within yhbSat 1844.764 kb on - strand, within yhbSat 1844.857 kb on - strand, within yhbSat 1844.857 kb on - strand, within yhbSat 1844.857 kb on - strand, within yhbSat 1844.907 kb on + strand, within yhbSat 1844.907 kb on + strand, within yhbSat 1844.907 kb on + strand, within yhbSat 1844.907 kb on + strand, within yhbSat 1844.907 kb on + strand, within yhbSat 1844.908 kb on - strand, within yhbSat 1844.908 kb on - strand, within yhbSat 1844.908 kb on - strand, within yhbSat 1844.908 kb on - strand, within yhbSat 1844.908 kb on - strand, within yhbSat 1844.967 kb on + strand, within yhbSat 1845.144 kb on + strandat 1845.144 kb on + strandat 1845.144 kb on + strandat 1845.144 kb on + strandat 1845.145 kb on - strandat 1845.145 kb on - strandat 1845.145 kb on - strandat 1845.145 kb on - strandat 1845.187 kb on - strandat 1845.367 kb on + strand, within OKGIIK_08420at 1845.367 kb on + strand, within OKGIIK_08420at 1845.367 kb on + strand, within OKGIIK_08420at 1845.367 kb on + strand, within OKGIIK_08420at 1845.367 kb on + strand, within OKGIIK_08420at 1845.367 kb on + strand, within OKGIIK_08420at 1845.368 kb on - strand, within OKGIIK_08420at 1845.368 kb on - strand, within OKGIIK_08420at 1845.368 kb on - strand, within OKGIIK_08420at 1845.368 kb on - strand, within OKGIIK_08420at 1845.368 kb on - strand, within OKGIIK_08420at 1845.368 kb on - strand, within OKGIIK_08420at 1845.368 kb on - strand, within OKGIIK_08420at 1845.658 kb on + strand, within OKGIIK_08420at 1845.658 kb on + strand, within OKGIIK_08420at 1845.658 kb on + strand, within OKGIIK_08420at 1845.658 kb on + strand, within OKGIIK_08420at 1845.658 kb on + strand, within OKGIIK_08420at 1845.659 kb on - strand, within OKGIIK_08420at 1845.659 kb on - strand, within OKGIIK_08420at 1845.659 kb on - strand, within OKGIIK_08420at 1845.659 kb on - strand, within OKGIIK_08420at 1845.880 kb on + strand, within OKGIIK_08420at 1845.880 kb on + strand, within OKGIIK_08420at 1845.880 kb on + strand, within OKGIIK_08420at 1845.880 kb on + strand, within OKGIIK_08420at 1845.880 kb on + strand, within OKGIIK_08420at 1845.880 kb on + strand, within OKGIIK_08420at 1845.880 kb on + strand, within OKGIIK_08420at 1845.880 kb on + strand, within OKGIIK_08420at 1845.880 kb on + strand, within OKGIIK_08420at 1845.880 kb on + strand, within OKGIIK_08420at 1845.880 kb on + strand, within OKGIIK_08420at 1845.880 kb on + strand, within OKGIIK_08420at 1845.881 kb on - strand, within OKGIIK_08420at 1845.881 kb on - strand, within OKGIIK_08420at 1845.881 kb on - strand, within OKGIIK_08420at 1845.881 kb on - strand, within OKGIIK_08420at 1845.881 kb on - strand, within OKGIIK_08420at 1845.881 kb on - strand, within OKGIIK_08420at 1845.881 kb on - strand, within OKGIIK_08420at 1845.881 kb on - strand, within OKGIIK_08420at 1845.881 kb on - strand, within OKGIIK_08420at 1845.881 kb on - strand, within OKGIIK_08420at 1845.886 kb on + strand, within OKGIIK_08420at 1845.886 kb on + strand, within OKGIIK_08420at 1845.886 kb on + strand, within OKGIIK_08420at 1845.886 kb on + strand, within OKGIIK_08420at 1845.886 kb on + strand, within OKGIIK_08420at 1845.887 kb on - strand, within OKGIIK_08420at 1845.887 kb on - strand, within OKGIIK_08420at 1845.887 kb on - strand, within OKGIIK_08420at 1846.097 kb on + strand, within OKGIIK_08420at 1846.097 kb on + strand, within OKGIIK_08420at 1846.098 kb on - strand, within OKGIIK_08420at 1846.129 kb on + strand, within OKGIIK_08420at 1846.219 kb on + strand, within OKGIIK_08420at 1846.220 kb on - strand, within OKGIIK_08420at 1846.348 kb on + strand, within OKGIIK_08420at 1846.348 kb on + strand, within OKGIIK_08420at 1846.348 kb on + strand, within OKGIIK_08420at 1846.348 kb on + strand, within OKGIIK_08420at 1846.349 kb on - strand, within OKGIIK_08420at 1846.349 kb on - strand, within OKGIIK_08420at 1846.492 kb on + strand, within OKGIIK_08420at 1846.493 kb on - strand, within OKGIIK_08420at 1846.761 kb on - strandat 1846.916 kb on - strand, within hutIat 1846.979 kb on + strand, within hutIat 1846.979 kb on + strand, within hutIat 1846.979 kb on + strand, within hutIat 1846.979 kb on + strand, within hutIat 1847.246 kb on + strand, within hutIat 1847.246 kb on + strand, within hutIat 1847.267 kb on + strand, within hutIat 1847.267 kb on + strand, within hutIat 1847.267 kb on + strand, within hutIat 1847.267 kb on + strand, within hutIat 1847.267 kb on + strand, within hutIat 1847.267 kb on + strand, within hutIat 1847.267 kb on + strand, within hutIat 1847.267 kb on + strand, within hutIat 1847.267 kb on + strand, within hutIat 1847.267 kb on + strand, within hutIat 1847.267 kb on + strand, within hutIat 1847.268 kb on - strand, within hutIat 1847.268 kb on - strand, within hutIat 1847.268 kb on - strand, within hutIat 1847.268 kb on - strand, within hutIat 1847.268 kb on - strand, within hutIat 1847.268 kb on - strand, within hutIat 1847.573 kb on + strand, within hutIat 1847.573 kb on + strand, within hutIat 1847.573 kb on + strand, within hutIat 1847.574 kb on - strand, within hutIat 1847.574 kb on - strand, within hutIat 1847.574 kb on - strand, within hutIat 1847.574 kb on - strand, within hutIat 1847.574 kb on - strand, within hutI

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
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1,844,325 + yhbS OKGIIK_08415 0.48 -0.1
1,844,325 + yhbS OKGIIK_08415 0.48 +1.1
1,844,325 + yhbS OKGIIK_08415 0.48 -2.3
1,844,326 - yhbS OKGIIK_08415 0.48 +1.1
1,844,326 - yhbS OKGIIK_08415 0.48 -0.9
1,844,326 - yhbS OKGIIK_08415 0.48 +0.3
1,844,326 - yhbS OKGIIK_08415 0.48 -1.7
1,844,326 - yhbS OKGIIK_08415 0.48 +0.3
1,844,376 + yhbS OKGIIK_08415 0.51 +2.0
1,844,376 + yhbS OKGIIK_08415 0.51 +0.2
1,844,376 + yhbS OKGIIK_08415 0.51 -0.2
1,844,376 + yhbS OKGIIK_08415 0.51 -0.1
1,844,376 + yhbS OKGIIK_08415 0.51 -1.4
1,844,377 - yhbS OKGIIK_08415 0.51 +0.2
1,844,377 - yhbS OKGIIK_08415 0.51 -2.4
1,844,377 - yhbS OKGIIK_08415 0.51 +0.1
1,844,377 - yhbS OKGIIK_08415 0.51 -1.1
1,844,377 - yhbS OKGIIK_08415 0.51 -1.4
1,844,400 + yhbS OKGIIK_08415 0.52 +0.7
1,844,400 + yhbS OKGIIK_08415 0.52 +0.6
1,844,401 - yhbS OKGIIK_08415 0.53 +0.6
1,844,401 - yhbS OKGIIK_08415 0.53 -0.7
1,844,401 - yhbS OKGIIK_08415 0.53 -2.3
1,844,505 + yhbS OKGIIK_08415 0.59 -1.4
1,844,506 - yhbS OKGIIK_08415 0.59 -0.9
1,844,506 - yhbS OKGIIK_08415 0.59 +0.9
1,844,550 + yhbS OKGIIK_08415 0.62 +0.9
1,844,550 + yhbS OKGIIK_08415 0.62 +1.4
1,844,550 + yhbS OKGIIK_08415 0.62 -1.4
1,844,550 + yhbS OKGIIK_08415 0.62 +0.5
1,844,550 + yhbS OKGIIK_08415 0.62 +0.3
1,844,551 - yhbS OKGIIK_08415 0.62 -0.9
1,844,551 - yhbS OKGIIK_08415 0.62 -0.6
1,844,551 - yhbS OKGIIK_08415 0.62 +1.9
1,844,551 - yhbS OKGIIK_08415 0.62 +0.1
1,844,551 - yhbS OKGIIK_08415 0.62 -0.5
1,844,551 - yhbS OKGIIK_08415 0.62 +0.6
1,844,551 - yhbS OKGIIK_08415 0.62 +1.6
1,844,619 + yhbS OKGIIK_08415 0.66 -1.1
1,844,619 + yhbS OKGIIK_08415 0.66 -1.7
1,844,619 + yhbS OKGIIK_08415 0.66 +0.9
1,844,619 + yhbS OKGIIK_08415 0.66 +1.3
1,844,619 + yhbS OKGIIK_08415 0.66 -2.2
1,844,619 + yhbS OKGIIK_08415 0.66 +0.4
1,844,619 + yhbS OKGIIK_08415 0.66 +1.4
1,844,619 + yhbS OKGIIK_08415 0.66 -1.9
1,844,619 + yhbS OKGIIK_08415 0.66 -0.5
1,844,619 + yhbS OKGIIK_08415 0.66 +0.6
1,844,619 + yhbS OKGIIK_08415 0.66 -0.9
1,844,619 + yhbS OKGIIK_08415 0.66 +0.4
1,844,619 + yhbS OKGIIK_08415 0.66 -1.2
1,844,620 - yhbS OKGIIK_08415 0.66 -0.2
1,844,620 - yhbS OKGIIK_08415 0.66 +1.0
1,844,620 - yhbS OKGIIK_08415 0.66 -0.4
1,844,620 - yhbS OKGIIK_08415 0.66 -0.4
1,844,620 - yhbS OKGIIK_08415 0.66 -0.9
1,844,764 - yhbS OKGIIK_08415 0.75 -0.5
1,844,857 - yhbS OKGIIK_08415 0.81 +0.9
1,844,857 - yhbS OKGIIK_08415 0.81 -0.7
1,844,857 - yhbS OKGIIK_08415 0.81 -1.2
1,844,907 + yhbS OKGIIK_08415 0.84 -0.4
1,844,907 + yhbS OKGIIK_08415 0.84 -0.7
1,844,907 + yhbS OKGIIK_08415 0.84 +0.6
1,844,907 + yhbS OKGIIK_08415 0.84 +0.3
1,844,907 + yhbS OKGIIK_08415 0.84 +0.5
1,844,908 - yhbS OKGIIK_08415 0.84 -1.7
1,844,908 - yhbS OKGIIK_08415 0.84 -0.9
1,844,908 - yhbS OKGIIK_08415 0.84 -1.2
1,844,908 - yhbS OKGIIK_08415 0.84 -1.4
1,844,908 - yhbS OKGIIK_08415 0.84 +0.5
1,844,967 + yhbS OKGIIK_08415 0.87 -0.2
1,845,144 + +0.1
1,845,144 + +0.2
1,845,144 + -0.4
1,845,144 + -1.4
1,845,145 - +1.4
1,845,145 - -0.6
1,845,145 - +0.2
1,845,145 - -0.2
1,845,187 - +1.0
1,845,367 + OKGIIK_08420 0.12 -0.9
1,845,367 + OKGIIK_08420 0.12 +0.6
1,845,367 + OKGIIK_08420 0.12 -1.1
1,845,367 + OKGIIK_08420 0.12 -0.2
1,845,367 + OKGIIK_08420 0.12 -1.5
1,845,367 + OKGIIK_08420 0.12 +0.6
1,845,368 - OKGIIK_08420 0.12 -0.8
1,845,368 - OKGIIK_08420 0.12 +0.6
1,845,368 - OKGIIK_08420 0.12 +0.2
1,845,368 - OKGIIK_08420 0.12 -2.4
1,845,368 - OKGIIK_08420 0.12 +0.7
1,845,368 - OKGIIK_08420 0.12 +0.6
1,845,368 - OKGIIK_08420 0.12 -0.4
1,845,658 + OKGIIK_08420 0.31 -1.5
1,845,658 + OKGIIK_08420 0.31 -1.7
1,845,658 + OKGIIK_08420 0.31 -0.1
1,845,658 + OKGIIK_08420 0.31 -1.6
1,845,658 + OKGIIK_08420 0.31 -0.4
1,845,659 - OKGIIK_08420 0.31 -0.4
1,845,659 - OKGIIK_08420 0.31 -0.7
1,845,659 - OKGIIK_08420 0.31 -0.2
1,845,659 - OKGIIK_08420 0.31 -1.6
1,845,880 + OKGIIK_08420 0.47 -0.4
1,845,880 + OKGIIK_08420 0.47 +0.9
1,845,880 + OKGIIK_08420 0.47 -0.5
1,845,880 + OKGIIK_08420 0.47 +0.5
1,845,880 + OKGIIK_08420 0.47 -0.7
1,845,880 + OKGIIK_08420 0.47 -0.4
1,845,880 + OKGIIK_08420 0.47 +0.7
1,845,880 + OKGIIK_08420 0.47 +0.6
1,845,880 + OKGIIK_08420 0.47 +0.8
1,845,880 + OKGIIK_08420 0.47 +0.6
1,845,880 + OKGIIK_08420 0.47 -2.1
1,845,880 + OKGIIK_08420 0.47 -1.6
1,845,881 - OKGIIK_08420 0.47 -0.6
1,845,881 - OKGIIK_08420 0.47 -0.7
1,845,881 - OKGIIK_08420 0.47 +1.4
1,845,881 - OKGIIK_08420 0.47 +1.7
1,845,881 - OKGIIK_08420 0.47 +0.6
1,845,881 - OKGIIK_08420 0.47 +0.6
1,845,881 - OKGIIK_08420 0.47 -1.7
1,845,881 - OKGIIK_08420 0.47 +0.1
1,845,881 - OKGIIK_08420 0.47 -0.7
1,845,881 - OKGIIK_08420 0.47 +0.7
1,845,886 + OKGIIK_08420 0.47 -0.3
1,845,886 + OKGIIK_08420 0.47 -0.9
1,845,886 + OKGIIK_08420 0.47 -1.7
1,845,886 + OKGIIK_08420 0.47 -0.4
1,845,886 + OKGIIK_08420 0.47 +0.8
1,845,887 - OKGIIK_08420 0.47 -0.8
1,845,887 - OKGIIK_08420 0.47 +0.7
1,845,887 - OKGIIK_08420 0.47 +1.8
1,846,097 + OKGIIK_08420 0.61 -1.2
1,846,097 + OKGIIK_08420 0.61 -1.9
1,846,098 - OKGIIK_08420 0.61 -0.7
1,846,129 + OKGIIK_08420 0.63 +1.0
1,846,219 + OKGIIK_08420 0.70 +0.2
1,846,220 - OKGIIK_08420 0.70 +1.1
1,846,348 + OKGIIK_08420 0.78 -0.1
1,846,348 + OKGIIK_08420 0.78 +0.2
1,846,348 + OKGIIK_08420 0.78 -0.7
1,846,348 + OKGIIK_08420 0.78 -0.6
1,846,349 - OKGIIK_08420 0.78 +0.2
1,846,349 - OKGIIK_08420 0.78 +0.1
1,846,492 + OKGIIK_08420 0.88 +1.1
1,846,493 - OKGIIK_08420 0.88 -1.5
1,846,761 - -1.8
1,846,916 - hutI OKGIIK_08425 0.18 +0.3
1,846,979 + hutI OKGIIK_08425 0.23 +0.5
1,846,979 + hutI OKGIIK_08425 0.23 -0.8
1,846,979 + hutI OKGIIK_08425 0.23 +0.7
1,846,979 + hutI OKGIIK_08425 0.23 +1.3
1,847,246 + hutI OKGIIK_08425 0.45 +0.5
1,847,246 + hutI OKGIIK_08425 0.45 +0.3
1,847,267 + hutI OKGIIK_08425 0.47 -0.0
1,847,267 + hutI OKGIIK_08425 0.47 -0.4
1,847,267 + hutI OKGIIK_08425 0.47 +0.3
1,847,267 + hutI OKGIIK_08425 0.47 +0.3
1,847,267 + hutI OKGIIK_08425 0.47 -0.8
1,847,267 + hutI OKGIIK_08425 0.47 -0.4
1,847,267 + hutI OKGIIK_08425 0.47 -0.7
1,847,267 + hutI OKGIIK_08425 0.47 -0.4
1,847,267 + hutI OKGIIK_08425 0.47 +0.6
1,847,267 + hutI OKGIIK_08425 0.47 -0.4
1,847,267 + hutI OKGIIK_08425 0.47 -0.2
1,847,268 - hutI OKGIIK_08425 0.47 -1.4
1,847,268 - hutI OKGIIK_08425 0.47 -0.9
1,847,268 - hutI OKGIIK_08425 0.47 -1.4
1,847,268 - hutI OKGIIK_08425 0.47 +1.1
1,847,268 - hutI OKGIIK_08425 0.47 +1.1
1,847,268 - hutI OKGIIK_08425 0.47 -0.9
1,847,573 + hutI OKGIIK_08425 0.72 +1.1
1,847,573 + hutI OKGIIK_08425 0.72 +0.6
1,847,573 + hutI OKGIIK_08425 0.72 -2.6
1,847,574 - hutI OKGIIK_08425 0.72 +0.2
1,847,574 - hutI OKGIIK_08425 0.72 -1.9
1,847,574 - hutI OKGIIK_08425 0.72 -0.4
1,847,574 - hutI OKGIIK_08425 0.72 -0.4
1,847,574 - hutI OKGIIK_08425 0.72 -0.4

Or see this region's nucleotide sequence