Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08055

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttig and Leu_trna are separated by 92 nucleotidesLeu_trna and Lys_trna are separated by 274 nucleotidesLys_trna and His_trna are separated by 20 nucleotidesHis_trna and Arg_trna are separated by 13 nucleotidesArg_trna and Pro_trna are separated by 24 nucleotidesPro_trna and Arg_trna are separated by 177 nucleotidesArg_trna and ftsH are separated by 234 nucleotides OKGIIK_08045: tig - trigger factor, at 1,776,995 to 1,778,287 tig OKGIIK_08050: Leu_trna - tRNA-Leu, at 1,778,380 to 1,778,464 _trna OKGIIK_08055: Lys_trna - tRNA-Lys, at 1,778,739 to 1,778,814 _trna OKGIIK_08060: His_trna - tRNA-His, at 1,778,835 to 1,778,911 _trna OKGIIK_08065: Arg_trna - tRNA-Arg, at 1,778,925 to 1,779,001 _trna OKGIIK_08070: Pro_trna - tRNA-Pro, at 1,779,026 to 1,779,102 _trna OKGIIK_08075: Arg_trna - tRNA-Arg, at 1,779,280 to 1,779,356 _trna OKGIIK_08080: ftsH - ATP-dependent zinc metalloprotease FtsH, at 1,779,591 to 1,781,549 ftsH Position (kb) 1778 1779Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1777.785 kb on + strand, within tigat 1777.786 kb on - strand, within tigat 1777.786 kb on - strand, within tigat 1777.974 kb on + strand, within tigat 1777.974 kb on + strand, within tigat 1777.974 kb on + strand, within tigat 1778.300 kb on + strandat 1778.300 kb on + strandat 1778.300 kb on + strandat 1778.300 kb on + strandat 1778.301 kb on - strandat 1778.301 kb on - strandat 1778.301 kb on - strandat 1778.303 kb on + strandat 1778.303 kb on + strandat 1778.303 kb on + strandat 1778.303 kb on + strandat 1778.303 kb on + strandat 1778.304 kb on - strandat 1778.304 kb on - strandat 1778.304 kb on - strandat 1778.304 kb on - strandat 1778.304 kb on - strandat 1778.304 kb on - strandat 1778.304 kb on - strandat 1778.304 kb on - strandat 1778.304 kb on - strandat 1778.304 kb on - strandat 1778.304 kb on - strandat 1778.361 kb on + strandat 1778.361 kb on + strandat 1778.362 kb on - strandat 1778.362 kb on - strandat 1778.486 kb on - strandat 1778.486 kb on - strandat 1778.486 kb on - strandat 1778.486 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.494 kb on - strandat 1778.494 kb on - strandat 1778.494 kb on - strandat 1778.494 kb on - strandat 1778.494 kb on - strandat 1778.568 kb on - strandat 1778.568 kb on - strandat 1778.568 kb on - strandat 1778.568 kb on - strandat 1778.568 kb on - strandat 1778.568 kb on - strandat 1778.568 kb on - strandat 1778.568 kb on - strandat 1778.568 kb on - strandat 1778.584 kb on + strandat 1778.585 kb on - strandat 1778.587 kb on - strandat 1778.587 kb on - strandat 1778.587 kb on - strandat 1778.587 kb on - strandat 1778.605 kb on - strandat 1778.605 kb on - strandat 1778.605 kb on - strandat 1778.605 kb on - strandat 1778.605 kb on - strandat 1778.923 kb on - strandat 1779.275 kb on - strandat 1779.275 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
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1,777,785 + tig OKGIIK_08045 0.61 -1.3
1,777,786 - tig OKGIIK_08045 0.61 -1.3
1,777,786 - tig OKGIIK_08045 0.61 -1.3
1,777,974 + tig OKGIIK_08045 0.76 -0.0
1,777,974 + tig OKGIIK_08045 0.76 -0.9
1,777,974 + tig OKGIIK_08045 0.76 +1.0
1,778,300 + -1.8
1,778,300 + -0.7
1,778,300 + -0.3
1,778,300 + -0.2
1,778,301 - +2.0
1,778,301 - -0.7
1,778,301 - -0.3
1,778,303 + -0.3
1,778,303 + +1.4
1,778,303 + -0.6
1,778,303 + -1.2
1,778,303 + -1.8
1,778,304 - -0.4
1,778,304 - +0.7
1,778,304 - +0.5
1,778,304 - -0.7
1,778,304 - +0.6
1,778,304 - -0.9
1,778,304 - -0.9
1,778,304 - -1.8
1,778,304 - +1.7
1,778,304 - +1.1
1,778,304 - -0.9
1,778,361 + -0.3
1,778,361 + +2.2
1,778,362 - -0.3
1,778,362 - +0.2
1,778,486 - -0.5
1,778,486 - +0.2
1,778,486 - -0.3
1,778,486 - +0.7
1,778,490 - -0.1
1,778,490 - -2.3
1,778,490 - -1.5
1,778,490 - +0.1
1,778,490 - -0.3
1,778,490 - +0.3
1,778,490 - -1.6
1,778,490 - -1.5
1,778,490 - +1.7
1,778,490 - -0.8
1,778,490 - +0.1
1,778,490 - -0.2
1,778,490 - +0.5
1,778,490 - -0.3
1,778,490 - +0.3
1,778,494 - +1.4
1,778,494 - +0.7
1,778,494 - -0.1
1,778,494 - -2.2
1,778,494 - -0.7
1,778,568 - +1.2
1,778,568 - +0.1
1,778,568 - -0.3
1,778,568 - +0.3
1,778,568 - -0.2
1,778,568 - +0.7
1,778,568 - +0.1
1,778,568 - +0.3
1,778,568 - -0.4
1,778,584 + -0.3
1,778,585 - -1.9
1,778,587 - -1.9
1,778,587 - +0.7
1,778,587 - +2.0
1,778,587 - +0.8
1,778,605 - -2.9
1,778,605 - -0.7
1,778,605 - -2.2
1,778,605 - -0.8
1,778,605 - -0.7
1,778,923 - -0.5
1,779,275 - -0.5
1,779,275 - +0.2

Or see this region's nucleotide sequence