Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ccoP and OKGIIK_07675 overlap by 17 nucleotides OKGIIK_07675 and OKGIIK_07680 overlap by 4 nucleotides OKGIIK_07680 and ccoS overlap by 4 nucleotides ccoS and OKGIIK_07690 overlap by 104 nucleotides
OKGIIK_07670: ccoP - cytochrome-c oxidase, cbb3-type subunit III, at 1,695,724 to 1,696,635
ccoP
OKGIIK_07675: OKGIIK_07675 - hypothetical protein, at 1,696,619 to 1,696,855
_07675
OKGIIK_07680: OKGIIK_07680 - ATPase P, at 1,696,852 to 1,699,110
_07680
OKGIIK_07685: ccoS - cbb3-type cytochrome oxidase assembly protein CcoS, at 1,699,107 to 1,699,349
ccoS
OKGIIK_07690: OKGIIK_07690 - Acetyl-CoA hydrolase, at 1,699,246 to 1,701,243
_07690
Position (kb)
1696
1697
1698
1699
1700 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1696.072 kb on + strand, within ccoP at 1696.073 kb on - strand, within ccoP at 1696.328 kb on - strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.470 kb on - strand, within ccoP at 1696.588 kb on + strand at 1696.589 kb on - strand at 1696.594 kb on + strand at 1696.780 kb on + strand, within OKGIIK_07675 at 1696.780 kb on + strand, within OKGIIK_07675 at 1697.228 kb on - strand, within OKGIIK_07680 at 1697.242 kb on + strand, within OKGIIK_07680 at 1699.747 kb on + strand, within OKGIIK_07690 at 1699.748 kb on + strand, within OKGIIK_07690 at 1699.748 kb on + strand, within OKGIIK_07690 at 1699.749 kb on - strand, within OKGIIK_07690 at 1699.749 kb on - strand, within OKGIIK_07690 at 1699.749 kb on - strand, within OKGIIK_07690 at 1699.749 kb on - strand, within OKGIIK_07690 at 1699.799 kb on + strand, within OKGIIK_07690 at 1699.907 kb on + strand, within OKGIIK_07690 at 1699.907 kb on + strand, within OKGIIK_07690 at 1699.907 kb on + strand, within OKGIIK_07690 at 1699.907 kb on + strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1700.048 kb on + strand, within OKGIIK_07690 at 1700.049 kb on - strand, within OKGIIK_07690
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x remove 1,696,072 + ccoP OKGIIK_07670 0.38 -0.7 1,696,073 - ccoP OKGIIK_07670 0.38 +0.5 1,696,328 - ccoP OKGIIK_07670 0.66 -1.1 1,696,469 + ccoP OKGIIK_07670 0.82 +0.1 1,696,469 + ccoP OKGIIK_07670 0.82 -1.9 1,696,469 + ccoP OKGIIK_07670 0.82 -0.7 1,696,469 + ccoP OKGIIK_07670 0.82 -0.7 1,696,469 + ccoP OKGIIK_07670 0.82 -0.3 1,696,470 - ccoP OKGIIK_07670 0.82 -1.3 1,696,588 + +0.3 1,696,589 - -0.9 1,696,594 + -0.5 1,696,780 + OKGIIK_07675 0.68 -0.3 1,696,780 + OKGIIK_07675 0.68 +0.7 1,697,228 - OKGIIK_07680 0.17 -0.9 1,697,242 + OKGIIK_07680 0.17 -0.1 1,699,747 + OKGIIK_07690 0.25 +1.1 1,699,748 + OKGIIK_07690 0.25 -0.5 1,699,748 + OKGIIK_07690 0.25 -3.3 1,699,749 - OKGIIK_07690 0.25 +0.3 1,699,749 - OKGIIK_07690 0.25 -1.5 1,699,749 - OKGIIK_07690 0.25 +0.3 1,699,749 - OKGIIK_07690 0.25 +0.6 1,699,799 + OKGIIK_07690 0.28 +0.7 1,699,907 + OKGIIK_07690 0.33 +1.4 1,699,907 + OKGIIK_07690 0.33 +0.7 1,699,907 + OKGIIK_07690 0.33 -0.9 1,699,907 + OKGIIK_07690 0.33 -0.2 1,699,908 - OKGIIK_07690 0.33 -0.3 1,699,908 - OKGIIK_07690 0.33 -0.7 1,699,908 - OKGIIK_07690 0.33 +0.4 1,699,908 - OKGIIK_07690 0.33 +0.2 1,699,908 - OKGIIK_07690 0.33 +0.9 1,699,908 - OKGIIK_07690 0.33 +0.3 1,699,908 - OKGIIK_07690 0.33 +1.2 1,699,908 - OKGIIK_07690 0.33 +0.7 1,700,048 + OKGIIK_07690 0.40 -0.2 1,700,049 - OKGIIK_07690 0.40 +0.8
Or see this region's nucleotide sequence