Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt asd and OKGIIK_04820 are separated by 2 nucleotides OKGIIK_04820 and OKGIIK_04825 are separated by 171 nucleotides
OKGIIK_04815: asd - aspartate-semialdehyde dehydrogenase, at 1,047,183 to 1,048,214
asd
OKGIIK_04820: OKGIIK_04820 - hypothetical protein, at 1,048,217 to 1,048,513
_04820
OKGIIK_04825: OKGIIK_04825 - Fimbrial protein FimV, at 1,048,685 to 1,051,072
_04825
Position (kb)
1048
1049 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1048.206 kb on + strand at 1048.206 kb on + strand at 1048.206 kb on + strand at 1048.206 kb on + strand at 1048.206 kb on + strand at 1048.206 kb on + strand at 1048.206 kb on + strand at 1048.206 kb on + strand at 1048.207 kb on - strand at 1048.207 kb on - strand at 1048.207 kb on - strand at 1048.207 kb on - strand at 1048.207 kb on - strand at 1048.207 kb on - strand at 1048.207 kb on - strand at 1048.207 kb on - strand at 1048.207 kb on - strand at 1048.207 kb on - strand at 1048.207 kb on - strand at 1048.207 kb on - strand at 1048.207 kb on - strand at 1048.541 kb on + strand at 1048.541 kb on + strand at 1048.541 kb on + strand at 1048.542 kb on - strand at 1048.542 kb on - strand at 1048.542 kb on - strand at 1048.542 kb on - strand at 1048.542 kb on - strand at 1048.542 kb on - strand at 1048.558 kb on + strand at 1048.558 kb on + strand at 1048.558 kb on + strand at 1048.558 kb on + strand at 1048.559 kb on - strand at 1048.571 kb on + strand at 1048.571 kb on + strand at 1048.571 kb on + strand at 1048.571 kb on + strand at 1048.571 kb on + strand at 1048.571 kb on + strand at 1048.571 kb on + strand at 1048.571 kb on + strand at 1048.571 kb on + strand at 1048.571 kb on + strand at 1048.571 kb on + strand at 1048.571 kb on + strand at 1048.571 kb on + strand at 1048.572 kb on - strand at 1048.572 kb on - strand at 1048.572 kb on - strand at 1048.572 kb on - strand at 1048.572 kb on - strand at 1048.572 kb on - strand at 1048.572 kb on - strand at 1048.572 kb on - strand at 1048.572 kb on - strand at 1048.572 kb on - strand at 1048.572 kb on - strand at 1048.586 kb on + strand at 1048.586 kb on + strand at 1048.586 kb on + strand at 1048.586 kb on + strand at 1048.586 kb on + strand at 1048.586 kb on + strand at 1048.586 kb on + strand at 1048.586 kb on + strand at 1048.586 kb on + strand at 1048.586 kb on + strand at 1048.586 kb on + strand at 1048.586 kb on + strand at 1048.586 kb on + strand at 1048.587 kb on - strand at 1048.587 kb on - strand at 1048.587 kb on - strand at 1048.587 kb on - strand at 1048.592 kb on + strand at 1048.592 kb on + strand at 1048.592 kb on + strand at 1048.592 kb on + strand at 1048.592 kb on + strand at 1048.592 kb on + strand at 1048.592 kb on + strand at 1048.592 kb on + strand at 1048.592 kb on + strand at 1048.592 kb on + strand at 1048.592 kb on + strand at 1048.592 kb on + strand at 1048.592 kb on + strand at 1048.592 kb on + strand at 1048.593 kb on + strand at 1048.593 kb on - strand at 1048.593 kb on - strand at 1048.593 kb on - strand at 1048.593 kb on - strand at 1048.593 kb on - strand at 1048.593 kb on - strand at 1048.593 kb on - strand at 1048.593 kb on - strand at 1048.593 kb on - strand at 1048.597 kb on + strand at 1048.597 kb on + strand at 1048.597 kb on + strand at 1048.597 kb on + strand at 1048.597 kb on + strand at 1048.597 kb on + strand at 1048.597 kb on + strand at 1048.597 kb on + strand at 1048.598 kb on - strand at 1048.598 kb on - strand at 1048.598 kb on - strand at 1048.598 kb on - strand at 1048.598 kb on - strand at 1048.598 kb on - strand at 1048.598 kb on - strand at 1048.598 kb on - strand at 1048.598 kb on - strand at 1048.735 kb on + strand at 1048.939 kb on + strand, within OKGIIK_04825 at 1048.939 kb on + strand, within OKGIIK_04825 at 1048.939 kb on + strand, within OKGIIK_04825 at 1048.939 kb on + strand, within OKGIIK_04825 at 1048.939 kb on + strand, within OKGIIK_04825 at 1048.940 kb on - strand, within OKGIIK_04825 at 1048.940 kb on - strand, within OKGIIK_04825 at 1049.051 kb on + strand, within OKGIIK_04825 at 1049.052 kb on - strand, within OKGIIK_04825 at 1049.052 kb on - strand, within OKGIIK_04825 at 1049.391 kb on - strand, within OKGIIK_04825
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x remove 1,048,206 + -1.0 1,048,206 + +0.0 1,048,206 + +0.4 1,048,206 + -0.5 1,048,206 + -0.9 1,048,206 + -1.1 1,048,206 + -0.2 1,048,206 + -0.7 1,048,207 - -1.2 1,048,207 - +0.0 1,048,207 - +1.6 1,048,207 - -0.4 1,048,207 - +1.1 1,048,207 - +1.9 1,048,207 - +1.6 1,048,207 - +0.3 1,048,207 - +0.9 1,048,207 - -0.6 1,048,207 - +0.2 1,048,207 - +1.4 1,048,207 - -0.2 1,048,541 + -1.2 1,048,541 + -2.2 1,048,541 + -0.7 1,048,542 - -1.0 1,048,542 - -0.4 1,048,542 - -0.1 1,048,542 - -0.7 1,048,542 - +0.4 1,048,542 - -1.4 1,048,558 + -0.2 1,048,558 + +0.2 1,048,558 + -0.7 1,048,558 + +0.6 1,048,559 - +0.6 1,048,571 + -0.2 1,048,571 + -1.2 1,048,571 + -0.3 1,048,571 + -2.0 1,048,571 + -0.1 1,048,571 + +0.2 1,048,571 + -0.0 1,048,571 + +0.9 1,048,571 + +1.0 1,048,571 + +1.1 1,048,571 + +0.6 1,048,571 + -1.5 1,048,571 + +0.1 1,048,572 - +0.0 1,048,572 - +0.9 1,048,572 - -1.2 1,048,572 - -1.4 1,048,572 - -2.9 1,048,572 - -0.3 1,048,572 - +0.8 1,048,572 - -0.7 1,048,572 - +0.4 1,048,572 - -1.5 1,048,572 - +0.1 1,048,586 + -0.1 1,048,586 + -1.5 1,048,586 + +1.8 1,048,586 + -2.3 1,048,586 + +0.8 1,048,586 + +0.6 1,048,586 + -0.5 1,048,586 + +0.6 1,048,586 + +0.0 1,048,586 + -0.1 1,048,586 + -1.9 1,048,586 + -2.1 1,048,586 + +0.6 1,048,587 - -1.4 1,048,587 - -1.8 1,048,587 - +0.6 1,048,587 - -1.4 1,048,592 + -0.1 1,048,592 + -1.0 1,048,592 + -0.2 1,048,592 + +1.4 1,048,592 + +1.0 1,048,592 + +0.5 1,048,592 + +1.3 1,048,592 + +0.9 1,048,592 + +0.2 1,048,592 + +0.9 1,048,592 + -0.2 1,048,592 + -0.3 1,048,592 + -0.6 1,048,592 + +0.0 1,048,593 + -0.6 1,048,593 - -1.0 1,048,593 - -0.7 1,048,593 - -1.4 1,048,593 - +0.0 1,048,593 - +0.4 1,048,593 - +0.2 1,048,593 - +0.3 1,048,593 - +1.0 1,048,593 - -0.7 1,048,597 + +0.6 1,048,597 + -1.7 1,048,597 + -0.7 1,048,597 + +0.4 1,048,597 + +0.1 1,048,597 + +0.0 1,048,597 + -1.7 1,048,597 + -0.1 1,048,598 - -2.1 1,048,598 - -1.0 1,048,598 - +0.1 1,048,598 - +1.0 1,048,598 - +0.6 1,048,598 - -0.5 1,048,598 - -1.8 1,048,598 - +0.8 1,048,598 - +0.1 1,048,735 + +0.7 1,048,939 + OKGIIK_04825 0.11 +0.4 1,048,939 + OKGIIK_04825 0.11 -0.8 1,048,939 + OKGIIK_04825 0.11 +1.0 1,048,939 + OKGIIK_04825 0.11 -0.4 1,048,939 + OKGIIK_04825 0.11 -0.8 1,048,940 - OKGIIK_04825 0.11 +1.4 1,048,940 - OKGIIK_04825 0.11 -2.5 1,049,051 + OKGIIK_04825 0.15 +0.0 1,049,052 - OKGIIK_04825 0.15 +0.5 1,049,052 - OKGIIK_04825 0.15 -1.5 1,049,391 - OKGIIK_04825 0.30 -1.5
Or see this region's nucleotide sequence